Variant position: 388 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 1560 The length of the canonical sequence.
Location on the sequence:
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human CPKCVMAECKRPPEAFGFEQ ATREYTLQSFGEMADSFKADY
Mouse CPKCVMAECKRPPEAFGFEQ ATREYTLQSFGEMADSFKADY
Pig CPKCVMAECKRPPEAFGFEQ ATREYTLQSFGEMADSFKADY
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
1 – 1560 Lysine-specific demethylase 5C
The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases.
Iwase S.; Lan F.; Bayliss P.; de la Torre-Ubieta L.; Huarte M.; Qi H.H.; Whetstine J.R.; Bonni A.; Roberts T.M.; Shi Y.;
Cited for: FUNCTION; MUTAGENESIS OF HIS-514; CHARACTERIZATION OF VARIANTS MRXSCJ PRO-388; LEU-642; PHE-731 AND CYS-751;
Mutations in the JARID1C gene, which is involved in transcriptional regulation and chromatin remodeling, cause X-linked mental retardation.
Jensen L.R.; Amende M.; Gurok U.; Moser B.; Gimmel V.; Tzschach A.; Janecke A.R.; Tariverdian G.; Chelly J.; Fryns J.-P.; Van Esch H.; Kleefstra T.; Hamel B.C.J.; Moraine C.; Gecz J.; Turner G.; Reinhardt R.; Kalscheuer V.M.; Ropers H.-H.; Lenzner S.;
Am. J. Hum. Genet. 76:227-236(2005)
Cited for: VARIANTS MRXSCJ PRO-388; TYR-402; LYS-698 AND PHE-731; TISSUE SPECIFICITY;
Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.