Home  |  Contact

UniProtKB/Swiss-Prot O95571: Variant p.Arg163Trp

Persulfide dioxygenase ETHE1, mitochondrial
Gene: ETHE1
Chromosomal location: 19q13.32
Variant information

Variant position:  163
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Disease [Disclaimer]
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Arginine (R) to Tryptophan (W) at position 163 (R163W, p.Arg163Trp).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from large size and basic (R) to large size and aromatic (W)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -3
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Involvement in disease:  Ethylmalonic encephalopathy (EE) [MIM:602473]: Autosomal recessive disorder characterized by neurodevelopmental delay and regression, recurrent petechiae, acrocyanosis, diarrhea, leading to death in the first decade of life. It is also associated with persistent lactic acidemia and ethylmalonic and methylsuccinic aciduria. {ECO:0000269|PubMed:14732903, ECO:0000269|PubMed:18593870, ECO:0000269|PubMed:23144459}. Note=The disease is caused by mutations affecting the gene represented in this entry.
The name and a short description of the disease associated with the variant. For more information about the disease, the user can refer to OMIM, following the link provided after the disease acronym.

Variant description:  In EE.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  163
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  254
The length of the canonical sequence.

Location on the sequence:   VLNDHSMAFTGDALLIRGCG  R TDFQQGCAKTLYHSVHEKIF
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         VLNDHSMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHEKIF

Mouse                         VLNDQSMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHEKIF

Bovine                        VLNDHSMAFTGDALLIRGCGRTDFQQGCAETLYHSVHEKIF

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 8 – 254 Persulfide dioxygenase ETHE1, mitochondrial
Metal binding 154 – 154 Iron; catalytic
Modified residue 172 – 172 N6-acetyllysine; alternate
Modified residue 172 – 172 N6-succinyllysine; alternate


Literature citations

Ethylmalonic encephalopathy is caused by mutations in ETHE1, a gene encoding a mitochondrial matrix protein.
Tiranti V.; D'Adamo P.; Briem E.; Ferrari G.; Mineri R.; Lamantea E.; Mandel H.; Balestri P.; Garcia-Silva M.-T.; Vollmer B.; Rinaldo P.; Hahn S.H.; Leonard J.; Rahman S.; Dionisi-Vici C.; Garavaglia B.; Gasparini P.; Zeviani M.;
Am. J. Hum. Genet. 74:239-252(2004)
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; SUBCELLULAR LOCATION; TISSUE SPECIFICITY; FUNCTION; ABSENCE OF GLYOXALASE II ACTIVITY; VARIANTS EE CYS-38; ALA-136; TRP-163 AND ARG-185;

Identification of new mutations in the ETHE1 gene in a cohort of 14 patients presenting with ethylmalonic encephalopathy.
Mineri R.; Rimoldi M.; Burlina A.B.; Koskull S.; Perletti C.; Heese B.; von Dobeln U.; Mereghetti P.; Di Meo I.; Invernizzi F.; Zeviani M.; Uziel G.; Tiranti V.;
J. Med. Genet. 45:473-478(2008)
Cited for: VARIANTS EE PRO-55; ALA-136; ILE-152; GLN-163; TRP-163; LYS-164; ARG-185 AND ASN-196; CHARACTERIZATION OF VARIANTS EE PRO-55 AND LYS-164;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.