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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9H6U8: Variant p.Glu523Lys

Alpha-1,2-mannosyltransferase ALG9
Gene: ALG9
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Variant information Variant position: help 523 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change: help From Glutamate (E) to Lysine (K) at position 523 (E523K, p.Glu523Lys). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and acidic (E) to large size and basic (K) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description: help In CDG1L; impairs activity. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 523 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 611 The length of the canonical sequence.
Location on the sequence: help AEGPLATRIVPTDMNDQNLE E PSRYIDISKCHYLVDLDTMR The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human                         AEGPL------ATRIVPTDMNDQNLEEPSRYIDISKCHYLVDL--DTMR

Mouse                         AEGPL------ATRTVPTHMNDQNREEPSRYIDISKCHYLV

Caenorhabditis elegans        LKSDKLV---EVTRHIPTEMNNLNQEEISRYVDLDSCDYVV

Baker's yeast                 PESGSIF---KKIRTLPKGMNNKNIYDTGKEWPITRCDYFI

Fission yeast                 VESNSTWWNREGYYQIPEHMNEFNNEEPTRYTSLESCDFLI

Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 611 Alpha-1,2-mannosyltransferase ALG9
Topological domain 427 – 611 Lumenal



Literature citations
Identification and functional analysis of a defect in the human ALG9 gene: definition of congenital disorder of glycosylation type IL.
Frank C.G.; Grubenmann C.E.; Eyaid W.; Berger E.G.; Aebi M.; Hennet T.;
Am. J. Hum. Genet. 75:146-150(2004)
Cited for: FUNCTION; CATALYTIC ACTIVITY; PATHWAY; SUBCELLULAR LOCATION; VARIANT CDG1L LYS-523; VARIANT ILE-289;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.