UniProtKB/Swiss-Prot Q9NP31: Variant p.Asn52Ser

SH2 domain-containing protein 2A
Gene: SH2D2A
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Variant information Variant position:

52 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Asparagine (N) to Serine (S) at position 52 (N52S, p.Asn52Ser). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and polar (N) to small size and polar (S) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs926103 [ dbSNP | Ensembl ]

Sequence information Variant position:

52 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

389 The length of the canonical sequence.
Location on the sequence:

RSCQNLGYTAASPQAPEAAS N TGNAERAEEVPGEGSLFLQA The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         RSCQNLG----------------------YTAASPQAPEAASNTGNAERAEEVPGEGSLFLQA

Mouse                         GRCQNLSCGSRPSMQVMKEQGVQLSPRTNHTVVSASAPGTA

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 389	SH2 domain-containing protein 2A
Region	41 – 63	Disordered

Literature citations
Molecular cloning of a T cell-specific adapter protein (TSAd) containing an Src homology (SH) 2 domain and putative SH3 and phosphotyrosine binding sites.
Spurkland A.; Brinchmann J.E.; Markussen G.; Pedeutour F.; Munthe E.; Lea T.; Vartdal F.; Aasheim H.-C.;
J. Biol. Chem. 273:4539-4546(1998)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2 AND 3); VARIANT SER-52; The SH2D2A gene encoding the T-cell-specific adapter protein (TSAd) is localized centromeric to the CD1 gene cluster on human Chromosome 1.
Dai K.Z.; Vergnaud G.; Ando A.; Inoko H.; Spurkland A.;
Immunogenetics 51:179-185(2000)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 4); ALTERNATIVE SPLICING; VARIANT SER-52; VRAP is an adaptor protein that binds KDR, a receptor for vascular endothelial cell growth factor.
Wu L.-W.; Mayo L.D.; Dunbar J.D.; Kessler K.M.; Ozes O.N.; Warren R.S.; Donner D.B.;
J. Biol. Chem. 275:6059-6062(2000)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2); INTERACTION WITH KDR; VARIANT SER-52; Submission
Lee J.-S.; Suh K.S.; Burr J.G.;
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3); VARIANT SER-52; The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The MGC Project Team;
Genome Res. 14:2121-2127(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2); VARIANT SER-52; Immunoaffinity profiling of tyrosine phosphorylation in cancer cells.
Rush J.; Moritz A.; Lee K.A.; Guo A.; Goss V.L.; Spek E.J.; Zhang H.; Zha X.-M.; Polakiewicz R.D.; Comb M.J.;
Nat. Biotechnol. 23:94-101(2005)
Cited for: VARIANT [LARGE SCALE ANALYSIS] SER-52; IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS];

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.