UniProtKB/SwissProt variant VAR

Variant information

Variant position:

140

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LB/B

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Asparagine (N) to Histidine (H) at position 140 (N140H, p.Asn140His).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Similar physico-chemical property. Both residues are medium size and polar.

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

1

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Other resources:

Links to websites of interest for the variant.

Variant rs45447801 [ dbSNP | Ensembl ]

Sequence information

Variant position:

140

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

1704

The length of the canonical sequence.

Location on the sequence:

IRYDNCSSSVLAAVVFEHPF N HSKEPLPLAVKYHLRFSYTR

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         IRY---DNCSSSVLAAVVFEHPFNHSKEPLPLAVKYHLRFSYTR

Mouse                         IRY---DNHSSSVLAAVVFEHSFNHSQDPLPLAVKYHLRFS

Rat                           VRY---DNHSSNVLAAVVFEHTFNHSKDPLPLAVRYHLRFS

Slime mold                    QGYFLDPENYRGVMGGLWFDE--NDYRYNAPKVLKYSISVD

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 1704	Phospholipid-transporting ATPase ABCA3
Glycosylation	124 – 124	N-linked (GlcNAc...) asparagine
Glycosylation	140 – 140	N-linked (GlcNAc...) asparagine
Mutagenesis	124 – 124	N -> Q. Loss of N-glycosylation. Reduces protein expression by 50%. Affects anterograde trafficking; when associated with Q-140. Reduces protein expression by 85%; when associated with Q-140. Does not affect lamellar body membrane location.
Mutagenesis	140 – 140	N -> Q. Loss of N-glycosylation. Reduces protein expression by 50%. Affects anterograde trafficking; when associated with Q-124. Reduces protein expression by 85%; when associated with Q-140. Does not affect lamellar body membrane location.

Literature citations

Submission
SeattleSNPs variation discovery resource;
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS HIS-140 AND SER-766;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q99758: Variant p.Asn140His