UniProtKB/Swiss-Prot Q14654 : Variant p.Arg201His
ATP-sensitive inward rectifier potassium channel 11
Gene: KCNJ11
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Variant information
Variant position:
201
The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:
LP/P [Disclaimer : Variants classification is intended for research purposes only, not for clinical and diagnostic use . The label disease variant is assigned according to literature reports on probable disease-association that can be based on theoretical reasons. This label must not be considered as a definitive proof for the pathogenic role of a variant. ]
The variants are classified into three categories: LP/P, LB/B and US.LP/P: likely pathogenic or pathogenic. LB/B: likely benign or benign. US: uncertain significance
Residue change:
From Arginine (R) to Histidine (H) at position 201 (R201H, p.Arg201His).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:
Change from large size and basic (R) to medium size and polar (H)
The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:
0
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another: Lowest score: -4 (low probability of substitution).Highest score: 11 (high probability of substitution). More information can be found on the following page
Variant description:
In PNDM2; ability of ATP to block mutant channels greatly reduced.
Any additional useful information about the variant.
Other resources:
Links to websites of interest for the variant.
Sequence information
Variant position:
201
The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:
390
The length of the canonical sequence.
Location on the sequence:
LIFSKHAVIALRHGRLCFML
R VGDLRKSMIISATIHMQVVR
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:
The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human LIFSKHAVIALRHGRLCFMLR VGDLRKSMIISATIHMQVVR
Mouse LIFSKHAVITLRHGRLCFMLR VGDLRKSMIISATIHMQVVR
Rat LIFSKHAVITLRHGRLCFMLR VGDLRKSMIISATIHMQVVR
Rabbit LIFSKHAVIALRQGRLCFMLR VGDLRKSMIISATIHMQVVR
Sequence annotation in neighborhood:
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
Chain
1 – 390
ATP-sensitive inward rectifier potassium channel 11
Topological domain
167 – 390
Cytoplasmic
Beta strand
195 – 204
Literature citations
Permanent neonatal diabetes due to mutations in KCNJ11 encoding Kir6.2: patient characteristics and initial response to sulfonylurea therapy.
Sagen J.V.; Raeder H.; Hathout E.; Shehadeh N.; Gudmundsson K.; Baevre H.; Abuelo D.; Phornphutkul C.; Molnes J.; Bell G.I.; Gloyn A.L.; Hattersley A.T.; Molven A.; Soevik O.; Njoelstad P.R.;
Diabetes 53:2713-2718(2004)
Cited for: VARIANTS PNDM2 VAL-35; MET-59; HIS-201; CYS-330 AND ILE-333;
Kir6.2 mutations are a common cause of permanent neonatal diabetes in a large cohort of French patients.
Vaxillaire M.; Populaire C.; Busiah K.; Cave H.; Gloyn A.L.; Hattersley A.T.; Czernichow P.; Froguel P.; Polak M.;
Diabetes 53:2719-2722(2004)
Cited for: VARIANTS PNDM2 LEU-35; MET-59; CYS-201; HIS-201; LYS-322 AND CYS-330;
Activating mutations in the gene encoding the ATP-sensitive potassium-channel subunit Kir6.2 and permanent neonatal diabetes.
Gloyn A.L.; Pearson E.R.; Antcliff J.F.; Proks P.; Bruining G.J.; Slingerland A.S.; Howard N.; Srinivasan S.; Silva J.M.C.L.; Molnes J.; Edghill E.L.; Frayling T.M.; Temple I.K.; Mackay D.; Shield J.P.H.; Sumnik Z.; van Rhijn A.; Wales J.K.H.; Clark P.; Gorman S.; Aisenberg J.; Ellard S.; Njoelstad P.R.; Ashcroft F.M.; Hattersley A.T.;
N. Engl. J. Med. 350:1838-1849(2004)
Cited for: VARIANTS PNDM2 ARG-52; GLY-59; MET-59; HIS-201; CYS-201 AND LEU-296; CHARACTERIZATION OF VARIANT PNDM2 HIS-201;
Mutations in KCNJ11, which encodes Kir6.2, are a common cause of diabetes diagnosed in the first 6 months of life, with the phenotype determined by genotype.
Flanagan S.E.; Edghill E.L.; Gloyn A.L.; Ellard S.; Hattersley A.T.;
Diabetologia 49:1190-1197(2006)
Cited for: VARIANTS PNDM2 TYR-46; GLN-50; ARG-52; ASP-53; GLY-59; MET-59; PRO-164; TYR-166; THR-170; CYS-201; HIS-201; LEU-201; LEU-296 AND SER-330;
Prevalence of permanent neonatal diabetes in Slovakia and successful replacement of insulin with sulfonylurea therapy in KCNJ11 and ABCC8 mutation carriers.
Stanik J.; Gasperikova D.; Paskova M.; Barak L.; Javorkova J.; Jancova E.; Ciljakova M.; Hlava P.; Michalek J.; Flanagan S.E.; Pearson E.; Hattersley A.T.; Ellard S.; Klimes I.;
J. Clin. Endocrinol. Metab. 92:1276-1282(2007)
Cited for: VARIANTS PNDM2 TYR-46; PRO-164 AND HIS-201;
Disclaimer:
Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.