Sequence information
Variant position: 188 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 2146 The length of the canonical sequence.
Location on the sequence:
SLGLALGQAQEPLHSLLEAA
E DLAQELLALRSLVELRALLQ
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human SLGLALGQAQEPLHSLLEAAE DLAQELLALRSLVELRALLQ
Mouse SLDPVLGQAQDSMRKFSDAIR DLAQELLTLPSLMELRALLR
Rat SLETVLGQAQDSMRKFSDATR TVAQELLTLPSLVELRALLR
Slime mold --------------------- --------------------
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
Chain
1 – 2146
Phospholipid-transporting ATPase ABCA7
Topological domain
43 – 549
Extracellular
Disulfide bond
75 – 225
Literature citations
Comparative analysis of the promoter structure and genomic organization of the human and mouse ABCA7 gene encoding a novel ABCA transporter.
Broccardo C.; Osorio J.; Luciani M.-F.; Schriml L.M.; Prades C.; Shulenin S.; Arnould I.; Naudin L.; Lafargue C.; Rosier M.; Jordan B.; Mattei M.-G.; Dean M.; Denefle P.; Chimini G.;
Cytogenet. Cell Genet. 92:264-270(2001)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1); VARIANTS GLY-188; ALA-1527 AND SER-2045; TISSUE SPECIFICITY; DEVELOPMENTAL STAGE;
Catalog of 605 single-nucleotide polymorphisms (SNPs) among 13 genes encoding human ATP-binding cassette transporters: ABCA4, ABCA7, ABCA8, ABCD1, ABCD3, ABCD4, ABCE1, ABCF1, ABCG1, ABCG2, ABCG4, ABCG5, and ABCG8.
Iida A.; Saito S.; Sekine A.; Mishima C.; Kitamura Y.; Kondo K.; Harigae S.; Osawa S.; Nakamura Y.;
J. Hum. Genet. 47:285-310(2002)
Cited for: VARIANTS GLY-188; ALA-319; ARG-395; HIS-463; THR-718; GLN-1349; ARG-1686 AND SER-2045;
Disclaimer:
Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.