UniProtKB/SwissProt variant VAR

Variant information

Variant position:

543

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

Polymorphism

The variants are classified into three categories: Disease, Polymorphism and Unclassified.

Disease: Variants implicated in disease according to literature reports.
Polymorphism: Variants not reported to be implicated in disease.
Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:

From Glycine (G) to Serine (S) at position 543 (G543S, p.Gly543Ser).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from glycine (G) to small size and polar (S)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

0

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Other resources:

Links to websites of interest for the variant.

Variant rs11549949 [ dbSNP | Ensembl ]

Sequence information

Variant position:

543

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

590

The length of the canonical sequence.

Location on the sequence:

GLAGGSSGSYYSSSSGGVGL G GGLSVGGSGFSASSGRGLGV

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         GLAGGSSG------------SYYSSSSGGVGLGGGLSVGGSGFSASSGRGLGV

Chimpanzee                    SLAGGGSG------------SYYSSSSGGVGLGGGLSVGGS

Mouse                         GL-----G------------PRFTRGGGGLGLGSGLSVGGS

Rat                           DI-----G------------PLLNRR----GLGSGLSVGGS

Bovine                        GLGGGLGGGLGSGLGGGGSSSFYSSSSGGVGLGGGLSVGGS

Xenopus laevis                -----------------------------------------

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 590	Keratin, type II cytoskeletal 5
Region	478 – 590	Tail
Compositional bias	528 – 590	Ser-rich

Literature citations

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The MGC Project Team;
Genome Res. 14:2121-2127(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]; VARIANTS GLY-528 AND SER-543;

Isolation and characterization of a cDNA clone coding for human epidermal keratin K5. Sequence of the carboxyterminal half of this keratin.
Galup C.; Darmon M.Y.;
J. Invest. Dermatol. 91:39-42(1988)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 348-590; VARIANT SER-543;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P13647: Variant p.Gly543Ser