UniProtKB/Swiss-Prot O00567: Variant p.Met475Thr

Nucleolar protein 56
Gene: NOP56
Feedback?

Variant information Variant position:

475 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Methionine (M) to Threonine (T) at position 475 (M475T, p.Met475Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and hydrophobic (M) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs6753 [ dbSNP | Ensembl ]

Sequence information Variant position:

475 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

594 The length of the canonical sequence.
Location on the sequence:

AALALASSENSSSTPEECEE M SEKPKKKKKQKPQEVPQENG The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         AALALASSENSSSTPEECEEMSEKPKKKKKQKPQEVPQENG

Mouse                         AALALASSENSST-PEECEEVNEKSKKKKKLKP----QENG

Bovine                        AAIALASSENSSA-PEECEETSERPKKKKKQKPQEVLQENG

Caenorhabditis elegans        ----LAEESVTATAEAEVDEDAPKPKKKKKSKA--------

Slime mold                    SKKSKKEEKSSKKSKSDDVEMKEEPVKEEKKSS--------

Baker's yeast                 ----LEDDDEEKKEKKEKKSKKEKKEKKEKKDK--------

Fission yeast                 ----TISEKPSKKEKKDKKEKKKEKSKKKRSAD--------

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 594	Nucleolar protein 56
Region	458 – 594	Disordered
Compositional bias	471 – 491	Basic and acidic residues
Modified residue	466 – 466	Phosphoserine
Modified residue	467 – 467	Phosphoserine
Modified residue	468 – 468	Phosphothreonine

Literature citations
Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis.
Gautier T.; Berges T.; Tollervey D.; Hurt E.;
Mol. Cell. Biol. 17:7088-7098(1997)
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; SUBCELLULAR LOCATION; VARIANT THR-475;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.