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UniProtKB/Swiss-Prot Q9C035: Variant p.Gly249Asp

Tripartite motif-containing protein 5
Gene: TRIM5
Variant information

Variant position:  249
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LB/B
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Glycine (G) to Aspartate (D) at position 249 (G249D, p.Gly249Asp).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from glycine (G) to medium size and acidic (D)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -1
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  249
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  493
The length of the canonical sequence.

Location on the sequence:   RELISDLEHRLQGSVMELLQ  G VDGVIKRTENVTLKKPETFP
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         RELISDLEHRLQGSVMELLQGVDGVIKRTENVTLKKPETFP

Gorilla                       RELISDLEHRLQGSVMELLQGVDGVIKRMENVTLKKPETFP

Rhesus macaque                RELISELEHRLQGSMMDLLQGVDGIIKRIENMTLKKPKTFH

Chimpanzee                    RELISDLERRLQGSVMELLQGVDGVIKRMENVTLKKPETFP

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 2 – 493 Tripartite motif-containing protein 5
Alternative sequence 249 – 271 GVDGVIKRTENVTLKKPETFPKN -> DGERDLEEARNFSKKSKESVSSS. In isoform Epsilon.
Alternative sequence 249 – 257 GVDGVIKRT -> VKSGKKPEH. In isoform Iota.


Literature citations

High-frequency persistence of an impaired allele of the retroviral defense gene TRIM5alpha in humans.
Sawyer S.L.; Wu L.I.; Akey J.M.; Emerman M.; Malik H.S.;
Curr. Biol. 16:95-100(2006)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM ALPHA); VARIANTS TYR-43 AND ASP-249;

Submission
NIEHS SNPs program;
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS SER-31; TYR-43; TYR-58; GLU-110; PHE-112; GLN-136; ASP-249; TYR-419; SER-467 AND LEU-479;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.