Variant position: 249 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 493 The length of the canonical sequence.
Location on the sequence:
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human RELISDLEHRLQGSVMELLQ GVDGVIKRTENVTLKKPETFP
Gorilla RELISDLEHRLQGSVMELLQ GVDGVIKRMENVTLKKPETFP
Rhesus macaque RELISELEHRLQGSMMDLLQ GVDGIIKRIENMTLKKPKTFH
Chimpanzee RELISDLERRLQGSVMELLQ GVDGVIKRMENVTLKKPETFP
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
2 – 493 Tripartite motif-containing protein 5
249 – 271 GVDGVIKRTENVTLKKPETFPKN -> DGERDLEEARNFSKKSKESVSSS. In isoform Epsilon.
249 – 257 GVDGVIKRT -> VKSGKKPEH. In isoform Iota.
High-frequency persistence of an impaired allele of the retroviral defense gene TRIM5alpha in humans.
Sawyer S.L.; Wu L.I.; Akey J.M.; Emerman M.; Malik H.S.;
Curr. Biol. 16:95-100(2006)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM ALPHA); VARIANTS TYR-43 AND ASP-249;
NIEHS SNPs program;
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS SER-31; TYR-43; TYR-58; GLU-110; PHE-112; GLN-136; ASP-249; TYR-419; SER-467 AND LEU-479;
Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.