UniProtKB/Swiss-Prot O60687: Variant p.Asn327Ser

Sushi repeat-containing protein SRPX2
Gene: SRPX2
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Variant information Variant position:

327 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

US The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Asparagine (N) to Serine (S) at position 327 (N327S, p.Asn327Ser). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and polar (N) to small size and polar (S) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description:

In RESDX; uncertain significance; results in a gain of glycosylation; affects intracellular processing; does not affect interaction with PLAUR. Any additional useful information about the variant.
Other resources:

Links to websites of interest for the variant.

Variant rs121918363 [ dbSNP | Ensembl ]

Sequence information Variant position:

327 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

465 The length of the canonical sequence.
Location on the sequence:

QSSRQWSGSPPICAPMKINV N VNSAAGLLDQFYEKQRLLII The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         QSSRQWSGSPPICAPMKINVNVNSAAGLLDQFYEKQRLLII

Mouse                         QSSRQWSGTPPVCTPMKINVNVNSAAGLLDQFYEKQRLLIV

Rat                           QSSRQWSGSPPVCTPMKINVNVNSAAGLLDQFYEKQRLLIV

Bovine                        QSSRQWSGSPPVCVPMKINVNVNSAAGLLDQFYEKRRLLII

Xenopus laevis                QFSQNWAGTPSTCTPMLINVNVNSAGAFIDQFFEKQRLLFI

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	24 – 465	Sushi repeat-containing protein SRPX2

Literature citations
SRPX2 mutations in disorders of language cortex and cognition.
Roll P.; Rudolf G.; Pereira S.; Royer B.; Scheffer I.E.; Massacrier A.; Valenti M.-P.; Roeckel-Trevisiol N.; Jamali S.; Beclin C.; Seegmuller C.; Metz-Lutz M.-N.; Lemainque A.; Delepine M.; Caloustian C.; de Saint Martin A.; Bruneau N.; Depetris D.; Mattei M.-G.; Flori E.; Robaglia-Schlupp A.; Levy N.; Neubauer B.A.; Ravid R.; Marescaux C.; Berkovic S.F.; Hirsch E.; Lathrop M.; Cau P.; Szepetowski P.;
Hum. Mol. Genet. 15:1195-1207(2006)
Cited for: FUNCTION; SUBCELLULAR LOCATION; TISSUE SPECIFICITY; VARIANTS RESDX SER-72 AND SER-327; CHARACTERIZATION OF VARIANTS RESDX SER-72 AND SER-327;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.