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UniProtKB/Swiss-Prot Q9UM01: Variant p.Ser238Phe

Y+L amino acid transporter 1
Gene: SLC7A7
Variant information

Variant position:  238
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Disease [Disclaimer]
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Serine (S) to Phenylalanine (F) at position 238 (S238F, p.Ser238Phe).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from small size and polar (S) to large size and aromatic (F)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -2
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Involvement in disease:  Lysinuric protein intolerance (LPI) [MIM:222700]: A metabolic disorder characterized by increased renal excretion of cationic amino acid (CAA), reduced CAA absorption from intestine, and orotic aciduria. On a normal diet, LPI patients present poor feeding, vomiting, diarrhea, episodes of hyperammoniaemic coma and growth retardation. Hepatosplenomegaly, osteoporosis and a life-threatening pulmonary involvement (alveolar proteinosis) are also seen. Biochemically LPI is characterized by defective transport of dibasic amino acids at the basolateral membrane of epithelial cells in kidney and intestine. {ECO:0000269|PubMed:10080182, ECO:0000269|PubMed:10631139, ECO:0000269|PubMed:10655553, ECO:0000269|PubMed:12402335, ECO:0000269|PubMed:15756301, ECO:0000269|PubMed:15776427, ECO:0000269|PubMed:17764084, ECO:0000269|PubMed:9829974}. Note=The disease is caused by mutations affecting the gene represented in this entry.
The name and a short description of the disease associated with the variant. For more information about the disease, the user can refer to OMIM, following the link provided after the disease acronym.

Variant description:  In LPI.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  238
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  511
The length of the canonical sequence.

Location on the sequence:   FEGSSFAVGDIALALYSALF  S YSGWDTLNYVTEEIKNPERN
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         FEGSSFAVGDIALALYSALFSYSGWDTLNYVTEEIKNPERN

Mouse                         FEGSSFAMGDIALALYSALFSYSGWDTLNYVTEEIRNPERN

Rat                           FEGSSFAMGDIALALYSALFSYSGWDTLNYVTEEIRNPERN

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 511 Y+L amino acid transporter 1
Transmembrane 222 – 242 Helical


Literature citations

Five novel SLC7A7 variants and y+L gene-expression pattern in cultured lymphoblasts from Japanese patients with lysinuric protein intolerance.
Shoji Y.; Noguchi A.; Shoji Y.; Matsumori M.; Takasago Y.; Takayanagi M.; Yoshida Y.; Ihara K.; Hara T.; Yamaguchi S.; Yoshino M.; Kaji M.; Yamamoto S.; Nakai A.; Koizumi A.; Hokezu Y.; Nagamatsu K.; Mikami H.; Kitajima I.; Takada G.;
Hum. Mutat. 20:375-381(2002)
Cited for: VARIANTS LPI PHE-238 AND PRO-489;

Lysinuric protein intolerance: update and extended mutation analysis of the SLC7A7 gene.
Sperandeo M.P.; Andria G.; Sebastio G.;
Hum. Mutat. 29:14-21(2008)
Cited for: VARIANTS LPI ILE-5; GLU-36 DEL; LYS-50; LEU-53; VAL-54; PRO-124; PRO-140; LEU-152; ILE-188; GLU-191; PHE-238; ASP-251; PRO-261; MET-333; ARG-334; ASP-338; TYR-365; ARG-386 AND PRO-489;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.