UniProtKB/SwissProt variant VAR

Variant information

Variant position:

541

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LB/B

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Threonine (T) to Serine (S) at position 541 (T541S, p.Thr541Ser).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from medium size and polar (T) to small size and polar (S)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

1

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Other resources:

Links to websites of interest for the variant.

Variant rs7905784 [ dbSNP | Ensembl ]

Sequence information

Variant position:

541

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

875

The length of the canonical sequence.

Location on the sequence:

ELMDLPTCGARNLKQHLAKA T ASGIMGSPKPAIKSISASAL

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         ELMDLPTCGARNLKQHLAKATASGIMGSPKPAIKSISASAL

Mouse                         ELMALPTFGARNLQKHLARAKASG---SSKPAIQSISASAL

Xenopus laevis                ELMTLPTPGALNLKKHLSGVSPQANCGKEGQPIQSISASTL

Xenopus tropicalis            ELMTLPTPGALNLKKHFSGVPTQAN-EKGGQPFQSISASAL

Zebrafish                     GLMSMPTPGALNIKRHLGQSKSSA---VAGSSVQSVSASDL

Drosophila                    ---------GGPVSRLAGGVEAS-----RKQRVQDLERLRL

Baker's yeast                 ---------------------------------------NI

Fission yeast                 ----------------------------------ERERKER

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 875	Protein MCM10 homolog

Literature citations

Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.
Wiemann S.; Weil B.; Wellenreuther R.; Gassenhuber J.; Glassl S.; Ansorge W.; Boecher M.; Bloecker H.; Bauersachs S.; Blum H.; Lauber J.; Duesterhoeft A.; Beyer A.; Koehrer K.; Strack N.; Mewes H.-W.; Ottenwaelder B.; Obermaier B.; Tampe J.; Heubner D.; Wambutt R.; Korn B.; Klein M.; Poustka A.;
Genome Res. 11:422-435(2001)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2); VARIANTS PRO-195 AND SER-541;

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The MGC Project Team;
Genome Res. 14:2121-2127(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2); VARIANTS SER-541 AND ARG-669;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q7L590: Variant p.Thr541Ser