UniProtKB/Swiss-Prot Q8IYU2: Variant p.Arg17His

E3 ubiquitin-protein ligase HACE1
Gene: HACE1
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Variant information Variant position:

17 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Arginine (R) to Histidine (H) at position 17 (R17H, p.Arg17His). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from large size and basic (R) to medium size and polar (H) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs17853353 [ dbSNP | Ensembl ]

Sequence information Variant position:

17 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

909 The length of the canonical sequence.
Location on the sequence:

MERAMEQLNRLTRSLR R ARTVELPEDNETAVYTLMPM The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         MERAME----QLNRLTRSLRRARTVELPEDNETAVYTLMPM

Mouse                         MERAME----QLNRLTRSLRRARTVELPEDNETAVYT

Rat                           MERAME----QLNRLTRSLRRARTVELPEDNETAVYT

Bovine                        MERAME----QLNRLTRSLRRARTVELPDDNETAVYT

Chicken                       MERAME----QLNRLTRSLRRARTVELPDDNETAVYT

Xenopus laevis                MERAME----QLNRLTRSLRRARTVELPEDNETAVYT

Xenopus tropicalis            MERAME----QLNRLTRSLRRARTVELPEDNETAVYT

Zebrafish                     MERAMEHLNVQLNRLTRSLRRARTVELPEDSETAVYT

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 909	E3 ubiquitin-protein ligase HACE1
Region	1 – 21	N-terminal helix important for homodimerization
Alternative sequence	1 – 591	Missing. In isoform 2.
Alternative sequence	1 – 357	Missing. In isoform 3.
Mutagenesis	8 – 8	L -> AD. Exists as a mixture of monomer and dimer; promotes autoubiquitination and ubiquitination of RAC1.
Mutagenesis	11 – 11	L -> A. Exists as a mixture of monomer and dimer; promotes autoubiquitination and ubiquitination of RAC1.
Mutagenesis	11 – 11	L -> D. Monomeric; promotes autoubiquitination and ubiquitination of RAC1.
Mutagenesis	14 – 14	S -> E. Monomeric; promotes autoubiquitination and ubiquitination of RAC1.
Mutagenesis	15 – 15	L -> AD. Monomeric; promotes autoubiquitination and ubiquitination of RAC1.
Mutagenesis	20 – 20	T -> E. Monomeric; promotes autoubiquitination and ubiquitination of RAC1.

Literature citations
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The MGC Project Team;
Genome Res. 14:2121-2127(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1); VARIANTS HIS-17 AND THR-374;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.