UniProtKB/Swiss-Prot Q13126: Variant p.Val56Ile

S-methyl-5'-thioadenosine phosphorylase
Gene: MTAP
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Variant information Variant position:

56 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Valine (V) to Isoleucine (I) at position 56 (V56I, p.Val56Ile). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Similar physico-chemical property. Both residues are medium size and hydrophobic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs7023954 [ dbSNP | Ensembl ]

Sequence information Variant position:

56 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

283 The length of the canonical sequence.
Location on the sequence:

TPFGKPSDALILGKIKNVDC V LLARHGRQHTIMPSKVNYQA The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         TPFGKPSDALILGK----IKNVDCVLLA-RHGRQHTIMPSKVNYQA

Rhesus macaque                TPFGKPSDALILGK----IKNVDCVLLA-RHGRQHTIMPSK

Mouse                         TPFGKPSDALILGK----IKNVDCVLLA-RHGRQHTIMPSK

Bovine                        TPFGKPSDALVLGK----IKNVDCVLLA-RHGRQHTIMPSK

Xenopus tropicalis            TPFGKPSDALVLGK----IKNVDCVLLASRHGRQHTIAPTN

Zebrafish                     TPYGKPSDALILGK----IKNVDCVLLA-RHGRQHTIMPTN

Caenorhabditis elegans        TPYGKPSDDVVEGT----INGVECVLLA-RHGRKHDIMPGN

Drosophila                    TPYGEPSDALIEGE----INGVQCVLLA-RHGRKHDIMPSN

Baker's yeast                 TPWGTTSSPVTISQFVGTNSHFHVAFIA-RHGINHEYPPTK

Fission yeast                 TPWGYPASPISIAR---TTSGFLIAFLA-RHGVGHIYTPTE

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 283	S-methyl-5'-thioadenosine phosphorylase
Modified residue	51 – 51	N6-acetyllysine
Beta strand	53 – 59

Literature citations
Construction of a 2.8-megabase yeast artificial chromosome contig and cloning of the human methylthioadenosine phosphorylase gene from the tumor suppressor region on 9p21.
Olopade O.I.; Pomykala H.M.; Hagos F.; Sveen L.W.; Espinosa R. III; Dreyling M.H.; Gursky S.; Stadler W.M.; le Beau M.M.; Bohlander S.K.;
Proc. Natl. Acad. Sci. U.S.A. 92:6489-6493(1995)
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; VARIANT ILE-56; Identification of human methylthioadenosine phosphorylase (MTAP) mRNA mutation in colon cancer cell line COLO 205.
Li Q.; Cao W.-X.; Zhang Y.; Shi M.-M.; Liu B.-Y.; Zhu Z.-G.; Lin Y.-Z.;
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; VARIANT ILE-56; The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The MGC Project Team;
Genome Res. 14:2121-2127(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]; VARIANT ILE-56;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.