UniProtKB/Swiss-Prot P10163: Variant p.Ala272Pro

• Variant information
• Sequence information
• Literature citations
• All

Variant information

Variant position: 272 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: LB/B The variants are classified into three categories: LP/P, LB/B and US.

• LP/P: likely pathogenic or pathogenic.
• LB/B: likely benign or benign.
• US: uncertain significance

Residue change: From Alanine (A) to Proline (P) at position 272 (A272P, p.Ala272Pro). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: Change from small size and hydrophobic (A) to medium size and hydrophobic (P) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

• Lowest score: -4 (low probability of substitution).
• Highest score: 11 (high probability of substitution).

More information can be found on the following page
Polymorphism: The number of repeats is polymorphic and varies among different alleles. Allele S (short), allele M (medium) and allele L (long) contain 6, 7 and 9 tandem repeats respectively. Additional information on the polymorphism described.
Other resources: Links to websites of interest for the variant.

• Variant rs1052808 [ dbSNP | Ensembl ]

Sequence information

Variant position: 272 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 310 The length of the canonical sequence.
Location on the sequence: QEGNKPQGPPPPGKPQGPPP A GGNPQQPQAPPAGKPQGPPP The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

• Type: the type of sequence feature.
• Positions: endpoints of the sequence feature.
• Description: contains additional information about the feature.

Type	Positions	Description
Chain	17 – 310	Basic salivary proline-rich protein 4
Chain	241 – 310	Peptide P-D
Region	14 – 310	Disordered
Compositional bias	243 – 310	Pro residues

Literature citations

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The MGC Project Team;
Genome Res. 14:2121-2127(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ALLELE M); VARIANT PRO-272; PRB1, PRB2, and PRB4 coded polymorphisms among human salivary concanavalin-A binding, II-1, and Po proline-rich proteins.
Azen E.A.; Amberger E.; Fisher S.; Prakobphol A.; Niece R.L.;
Am. J. Hum. Genet. 58:143-153(1996)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 31-310 (ALLELE M); VARIANT PRO-272; Many protein products from a few loci: assignment of human salivary proline-rich proteins to specific loci.
Lyons K.M.; Stein J.H.; Smithies O.;
Genetics 120:255-265(1988)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 35-310; VARIANT PRO-272;