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UniProtKB/Swiss-Prot Q92673: Variant p.Gln1074Glu

Sortilin-related receptor
Gene: SORL1
Variant information

Variant position:  1074
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LB/B
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Glutamine (Q) to Glutamate (E) at position 1074 (Q1074E, p.Gln1074Glu).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from medium size and polar (Q) to medium size and acidic (E)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  2
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  1074
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  2214
The length of the canonical sequence.

Location on the sequence:   GDLMCDCPQGYQLKNNTCVK  Q ENTCLRNQYRCSNGNCINSI
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         GDLMCDCPQGYQLKNNTCVKQENTCLRNQYRCSNGNCINSI

Mouse                         GDLMCDCPQGYQRKNNTCVKEENTCLRNQYRCSNGNCINSI

Rat                           GYLMCDCPQGYERKNNTCVKEENTCLRNQYHCSNGNCINSI

Rabbit                        GDLMCDCPKGYELKNNTCVKEEDTCLRNQYRCSNGNCINSI

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 82 – 2214 Sortilin-related receptor
Topological domain 82 – 2137 Lumenal
Glycosylation 1068 – 1068 N-linked (GlcNAc...) asparagine


Literature citations

A novel mosaic protein containing LDL receptor elements is highly conserved in humans and chickens.
Morwald S.; Yamazaki H.; Bujo H.; Kusunoki J.; Kanaki T.; Seimiya K.; Morisaki N.; Nimpf J.; Schneider W.J.; Saito Y.;
Arterioscler. Thromb. Vasc. Biol. 17:996-1002(1997)
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; VARIANTS GLU-1074 AND ILE-1967; TISSUE SPECIFICITY;

Molecular characterization of a novel human hybrid-type receptor that binds the alpha2-macroglobulin receptor-associated protein.
Jacobsen L.; Madsen P.; Moestrup S.K.; Lund A.H.; Tommerup N.; Nykjaer A.; Sottrup-Jensen L.; Gliemann J.; Petersen C.M.;
J. Biol. Chem. 271:31379-31383(1996)
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; PROTEIN SEQUENCE OF 82-91; 114-121; 405-415 AND 2019-2030; VARIANTS GLU-1074 AND ILE-1967; TISSUE SPECIFICITY; INTERACTION WITH LRPAP1;

Submission
Mural R.J.; Istrail S.; Sutton G.G.; Florea L.; Halpern A.L.; Mobarry C.M.; Lippert R.; Walenz B.; Shatkay H.; Dew I.; Miller J.R.; Flanigan M.J.; Edwards N.J.; Bolanos R.; Fasulo D.; Halldorsson B.V.; Hannenhalli S.; Turner R.; Yooseph S.; Lu F.; Nusskern D.R.; Shue B.C.; Zheng X.H.; Zhong F.; Delcher A.L.; Huson D.H.; Kravitz S.A.; Mouchard L.; Reinert K.; Remington K.A.; Clark A.G.; Waterman M.S.; Eichler E.E.; Adams M.D.; Hunkapiller M.W.; Myers E.W.; Venter J.C.;
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]; VARIANTS GLU-1074 AND ILE-1967;

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The MGC Project Team;
Genome Res. 14:2121-2127(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]; VARIANTS GLU-1074 AND ILE-1967;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.