Variant position: 160 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 483 The length of the canonical sequence.
Location on the sequence:
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human AKKKTKKRDTKVGTIDDDPE YRKFLESYATDNEKMTSTPET
Zebrafish AKKRSKKKDAKSGTIDDDAD YKKFLEFYNGDEEKSPSNPEI
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
1 – 483 Regulator of nonsense transcripts 3B
30 – 255 Necessary for interaction with UPF2
169 – 169 Phosphothreonine
Mutations in UPF3B, a member of the nonsense-mediated mRNA decay complex, cause syndromic and nonsyndromic mental retardation.
Tarpey P.S.; Raymond F.L.; Nguyen L.S.; Rodriguez J.; Hackett A.; Vandeleur L.; Smith R.; Shoubridge C.; Edkins S.; Stevens C.; O'Meara S.; Tofts C.; Barthorpe S.; Buck G.; Cole J.; Halliday K.; Hills K.; Jones D.; Mironenko T.; Perry J.; Varian J.; West S.; Widaa S.; Teague J.; Dicks E.; Butler A.; Menzies A.; Richardson D.; Jenkinson A.; Shepherd R.; Raine K.; Moon J.; Luo Y.; Parnau J.; Bhat S.S.; Gardner A.; Corbett M.; Brooks D.; Thomas P.; Parkinson-Lawrence E.; Porteous M.E.; Warner J.P.; Sanderson T.; Pearson P.; Simensen R.J.; Skinner C.; Hoganson G.; Superneau D.; Wooster R.; Bobrow M.; Turner G.; Stevenson R.E.; Schwartz C.E.; Futreal P.A.; Srivastava A.K.; Stratton M.R.; Gecz J.;
Nat. Genet. 39:1127-1133(2007)
Cited for: VARIANT MRXS14 ASP-160;
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