UniProtKB/Swiss-Prot Q58DX5: Variant p.Leu677Ser

• Variant information
• Sequence information
• Literature citations
• All

Variant information

Variant position: 677 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: LB/B The variants are classified into three categories: LP/P, LB/B and US.

• LP/P: likely pathogenic or pathogenic.
• LB/B: likely benign or benign.
• US: uncertain significance

Residue change: From Leucine (L) to Serine (S) at position 677 (L677S, p.Leu677Ser). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: Change from medium size and hydrophobic (L) to small size and polar (S) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: -2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

• Lowest score: -4 (low probability of substitution).
• Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources: Links to websites of interest for the variant.

• Variant rs9826737 [ dbSNP | Ensembl ]

Sequence information

Variant position: 677 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 795 The length of the canonical sequence.
Location on the sequence: EVQNNLKGDQPNTHQLLAMA L RLRESAELFQSDEMRPANDP The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

• Type: the type of sequence feature.
• Positions: endpoints of the sequence feature.
• Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 795	Inactive N-acetylated-alpha-linked acidic dipeptidase-like protein 2
Topological domain	143 – 795	Extracellular
Alternative sequence	338 – 795	Missing. In isoform 2.

Literature citations

A giant novel gene undergoing extensive alternative splicing is severed by a Cornelia de Lange-associated translocation breakpoint at 3q26.3.
Tonkin E.T.; Smith M.; Eichhorn P.; Jones S.; Imamwerdi B.; Lindsay S.; Jackson M.; Wang T.-J.; Ireland M.; Burn J.; Krantz I.D.; Carr P.; Strachan T.;
Hum. Genet. 115:139-148(2004)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; NUCLEOTIDE SEQUENCE [MRNA] OF 1-291 (ISOFORM 2); IDENTIFICATION (ISOFORM 1); VARIANTS SER-68; MET-128; SER-385; ARG-622 AND SER-677; The full-ORF clone resource of the German cDNA consortium.
Bechtel S.; Rosenfelder H.; Duda A.; Schmidt C.P.; Ernst U.; Wellenreuther R.; Mehrle A.; Schuster C.; Bahr A.; Bloecker H.; Heubner D.; Hoerlein A.; Michel G.; Wedler H.; Koehrer K.; Ottenwaelder B.; Poustka A.; Wiemann S.; Schupp I.;
BMC Genomics 8:399-399(2007)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 277-795; VARIANTS SER-385; ARG-622 AND SER-677;