UniProtKB/Swiss-Prot Q8NCM8: Variant p.Arg2871Gln

Cytoplasmic dynein 2 heavy chain 1
Gene: DYNC2H1
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Variant information Variant position:

2871 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Arginine (R) to Glutamine (Q) at position 2871 (R2871Q, p.Arg2871Gln). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from large size and basic (R) to medium size and polar (Q) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs589623 [ dbSNP | Ensembl ]

Sequence information Variant position:

2871 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

4307 The length of the canonical sequence.
Location on the sequence:

FLKSFLLIHESCKAYGATPS R YMTFLHVYSAISSSKKKELL The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         FLKSFLLIHESCKAYGATPSRYMTFLHVYSAISSSKKKELL

Mouse                         FIKSFLLIHESCKAYGATPSRYMTFLHVYSAISSSKKKELL

Rat                           FIKSFLLIHESCKAYGATPSRYMTFLRVYSAISSSKRKELL

Caenorhabditis elegans        FNDVLVNLPEH---LSIQPIKYRQFVENFFQLLGYKRLTLS

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 4307	Cytoplasmic dynein 2 heavy chain 1
Alternative sequence	736 – 4122	Missing. In isoform 3.
Helix	2869 – 2994

Literature citations
The full-ORF clone resource of the German cDNA consortium.
Bechtel S.; Rosenfelder H.; Duda A.; Schmidt C.P.; Ernst U.; Wellenreuther R.; Mehrle A.; Schuster C.; Bahr A.; Bloecker H.; Heubner D.; Hoerlein A.; Michel G.; Wedler H.; Koehrer K.; Ottenwaelder B.; Poustka A.; Wiemann S.; Schupp I.;
BMC Genomics 8:399-399(2007)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2583-4307 (ISOFORM 2); VARIANT GLN-2871; Characterization of size-fractionated cDNA libraries generated by the in vitro recombination-assisted method.
Ohara O.; Nagase T.; Mitsui G.; Kohga H.; Kikuno R.; Hiraoka S.; Takahashi Y.; Kitajima S.; Saga Y.; Koseki H.;
DNA Res. 9:47-57(2002)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2623-4307 (ISOFORM 1); VARIANTS GLN-2871 AND VAL-3680;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.