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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P02766: Variant p.Tyr98Phe

Transthyretin
Gene: TTR
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Variant information Variant position: help 98 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Tyrosine (Y) to Phenylalanine (F) at position 98 (Y98F, p.Tyr98Phe). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Similar physico-chemical property. Both residues are large size and aromatic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In AMYLD1. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 98 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 147 The length of the canonical sequence.
Location on the sequence: help LTTEEEFVEGIYKVEIDTKS Y WKALGISPFHEHAEVVFTAN The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         LTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTAN

Chimpanzee                    LTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTAN

Mouse                         LTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTAN

Rat                           LTTDEKFTEGVYRVELDTKSYWKALGISPFHEYAEVVFTAN

Pig                           LTTDEKFVEGIYKVELDTKSYWKALGISPFHEYAEVVFTAN

Bovine                        LTTEDKFVEGLYKVELDTKSYWKSLGISPFHEFAEVVFTAN

Rabbit                        LTTSEKFVEGVYKVELDTKSYWKALGISPFHEYAEVVFTAN

Sheep                         LTTEDKFVEGLYKVELDTKSYWKSLGISPFHEYAEVVFTAN

Chicken                       LTTEEQFVEGVYRVEFDTSSYWKGLGLSPFHEYADVVFTAN

Xenopus laevis                LTTDEQFTEGVYKIEFATKAFWGKLGLSPFHEYVDVVFTAN

Xenopus tropicalis            IITDEQFTEGVYKIEFATKTFWRKLGLSPFHEYVDVVFSAN
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 21 – 147 Transthyretin
Glycosylation 118 – 118 N-linked (GlcNAc...) asparagine
Mutagenesis 107 – 107 F -> M. Loss of tetramerization; when associated with M-130.
Helix 95 – 101



Literature citations
X-ray crystallographic studies of two transthyretin variants: further insights into amyloidogenesis.
Neto-Silva R.M.; Macedo-Ribeiro S.; Pereira P.J.B.; Coll M.; Saraiva M.J.; Damas A.M.;
Acta Crystallogr. D 61:333-339(2005)
Cited for: X-RAY CRYSTALLOGRAPHY (1.55 ANGSTROMS) OF 21-147 OF VARIANT AMYLD1 PHE-98 AND VARIANT HIS-124; SUBUNIT; The binding of 2,4-dinitrophenol to wild-type and amyloidogenic transthyretin.
Morais-de-Sa E.; Neto-Silva R.M.; Pereira P.J.B.; Saraiva M.J.; Damas A.M.;
Acta Crystallogr. D 62:512-519(2006)
Cited for: X-RAY CRYSTALLOGRAPHY (1.7 ANGSTROMS) OF 21-147 OF WILD-TYPE AND VARIANTS AMYLD1 PRO-75 AND PHE-98; Genetic microheterogeneity of human transthyretin detected by IEF.
Altland K.; Benson M.D.; Costello C.E.; Ferlini A.; Hazenberg B.P.C.; Hund E.; Kristen A.V.; Linke R.P.; Merlini G.; Salvi F.; Saraiva M.J.; Singer R.; Skinner M.; Winter P.;
Electrophoresis 28:2053-2064(2007)
Cited for: VARIANTS AMYLD1 PRO-32; ILE-40; SER-44; ALA-50; MET-50; LEU-53; VAL-53; PRO-56; THR-65; ALA-67; ALA-69; ILE-69; ALA-80; LEU-84; LEU-88; ALA-91; TYR-97; PHE-98; SER-104; ASN-104; THR-104; ALA-114; GLY-117; ASN-126; MET-127; VAL-127; MET-131 AND ILE-142; VARIANTS ILE-33; SER-121 AND THR-129; VARIANT CHICAGO MET-139;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.