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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P55017: Variant p.Arg158Gln

Solute carrier family 12 member 3
Gene: SLC12A3
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Variant information Variant position: help 158 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Arginine (R) to Glutamine (Q) at position 158 (R158Q, p.Arg158Gln). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from large size and basic (R) to medium size and polar (Q) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In GTLMNS; impaired protein structure. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 158 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 1021 The length of the canonical sequence.
Location on the sequence: help WVKGVMIRCMLNIWGVILYL R LPWITAQAGIVLTWIIILLS The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         WVKGVMIRCMLNIWGVILYLRLPWITAQAGIVLTWIIILLS

Mouse                         WVKGVMIRCMLNIWGVILYLRLPWITAQAGIVLTWLIILLS

Rat                           WVKGVMIRCMLNIWGVILYLRLPWITAQAGIVLTWLIILLS
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 1021 Solute carrier family 12 member 3
Transmembrane 138 – 167 Discontinuously helical; Name=1
Binding site 148 – 148
Binding site 149 – 149
Binding site 151 – 151
Mutagenesis 149 – 149 N -> A. Reduced sensitivity to thiazide diuretics. Reduced sodium and chloride ion cotransporter activity.
Mutagenesis 158 – 158 R -> A. Strongly reduced sodium and chloride ion cotransporter activity.



Literature citations
Identification of fifteen novel mutations in the SLC12A3 gene encoding the Na-Cl Co-transporter in Italian patients with Gitelman syndrome.
Syren M.-L.; Tedeschi S.; Cesareo L.; Bellantuono R.; Colussi G.; Procaccio M.; Ali A.; Domenici R.; Malberti F.; Sprocati M.; Sacco M.; Miglietti N.; Edefonti A.; Sereni F.; Casari G.; Coviello D.A.; Bettinelli A.;
Hum. Mutat. 20:78-78(2002)
Cited for: VARIANTS GTLMNS GLN-158; MET-163; ARG-172; TRP-209; VAL-316; VAL-374; GLU-463; THR-464; LEU-615; TRP-615; GLY-642; HIS-642; MET-677; CYS-852; SER-852; GLY-958 AND TYR-985; VARIANT GLN-904; R158Q and G212S, novel pathogenic compound heterozygous variants in SLC12A3 of Gitelman syndrome.
Li Z.; Wu H.; Wei S.; Liu M.; Shi Y.; Li M.; Wang N.; Fang L.; Xiang B.; Gao L.; Xu C.; Zhao J.;
Front. Med. 16:932-945(2022)
Cited for: VARIANTS GTLMNS GLN-158 AND SER-212; CHARACTERIZATION OF VARIANTS GTLMNS GLN-158 AND SER-212; SUBCELLULAR LOCATION;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.