UniProtKB/Swiss-Prot P10721: Variant p.Met541Leu

Mast/stem cell growth factor receptor Kit
Gene: KIT
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Variant information Variant position:

541 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Methionine (M) to Leucine (L) at position 541 (M541L, p.Met541Leu). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Similar physico-chemical property. Both residues are medium size and hydrophobic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs3822214 [ dbSNP | Ensembl ]

Sequence information Variant position:

541 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

976 The length of the canonical sequence.
Location on the sequence:

LFTPLLIGFVIVAGMMCIIV M ILTYKYLQKPMYEVQWKVVE The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         LFTPLLIGFVIVAGMMCIIVMILTYKYLQKPMYEVQWKVVE

                              LFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVE

Mouse                         LFTPLLIGFVVAAGAMGIIVMVLTYKYLQKPMYEVQWKVVE

Pig                           LFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVE

Bovine                        LFTPLLIGFVIAAGLMCIFVMILTYKYLQKPMYEVQWKVVE

Goat                          LFTPLLIGFVIAAGLMCIFVMILTYKYLQKPMYEVQWKVVE

Cat                           LFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVE

Chicken                       LFTPLLIAFGVAAGLMCIIVMILVYIYLQKPKYEVQWKVVE

Xenopus laevis                LFTPLLIGFIAAAGLMCIAVAVLMYKYLQKPKYEIQWKVVE

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	26 – 976	Mast/stem cell growth factor receptor Kit
Transmembrane	525 – 545	Helical
Modified residue	547 – 547	Phosphotyrosine; by autocatalysis
Modified residue	553 – 553	Phosphotyrosine; by autocatalysis
Alternative sequence	1 – 744	MRGARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHTLFTPLLIGFVIVAGMMCIIVMILTYKYLQKPMYEVQWKVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSVRI -> MSLPLSFPFLTFMVVIAKKNPLFLT. In isoform 3.

Literature citations
Patterns of somatic mutation in human cancer genomes.
Greenman C.; Stephens P.; Smith R.; Dalgliesh G.L.; Hunter C.; Bignell G.; Davies H.; Teague J.; Butler A.; Stevens C.; Edkins S.; O'Meara S.; Vastrik I.; Schmidt E.E.; Avis T.; Barthorpe S.; Bhamra G.; Buck G.; Choudhury B.; Clements J.; Cole J.; Dicks E.; Forbes S.; Gray K.; Halliday K.; Harrison R.; Hills K.; Hinton J.; Jenkinson A.; Jones D.; Menzies A.; Mironenko T.; Perry J.; Raine K.; Richardson D.; Shepherd R.; Small A.; Tofts C.; Varian J.; Webb T.; West S.; Widaa S.; Yates A.; Cahill D.P.; Louis D.N.; Goldstraw P.; Nicholson A.G.; Brasseur F.; Looijenga L.; Weber B.L.; Chiew Y.-E.; DeFazio A.; Greaves M.F.; Green A.R.; Campbell P.; Birney E.; Easton D.F.; Chenevix-Trench G.; Tan M.-H.; Khoo S.K.; Teh B.T.; Yuen S.T.; Leung S.Y.; Wooster R.; Futreal P.A.; Stratton M.R.;
Nature 446:153-158(2007)
Cited for: VARIANTS [LARGE SCALE ANALYSIS] ILE-532; LEU-541; SER-691; ASN-715; ASN-737; TRP-804; TYR-816; LYS-822 AND PRO-829; Pediatric mastocytosis is a clonal disease associated with D816V and other activating c-KIT mutations.
Bodemer C.; Hermine O.; Palmerini F.; Yang Y.; Grandpeix-Guyodo C.; Leventhal P.S.; Hadj-Rabia S.; Nasca L.; Georgin-Lavialle S.; Cohen-Akenine A.; Launay J.M.; Barete S.; Feger F.; Arock M.; Catteau B.; Sans B.; Stalder J.F.; Skowron F.; Thomas L.; Lorette G.; Plantin P.; Bordigoni P.; Lortholary O.; de Prost Y.; Moussy A.; Sobol H.; Dubreuil P.;
J. Invest. Dermatol. 130:804-815(2010)
Cited for: VARIANT LEU-541; VARIANTS MASTC ILE-816; TYR-816 AND VAL-816; CHARACTERIZATION OF VARIANTS MASTC ILE-816; TYR-816 AND VAL-816;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.