UniProtKB/SwissProt variant VAR

Variant information

Variant position:

62

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LB/B

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Alanine (A) to Threonine (T) at position 62 (A62T, p.Ala62Thr).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from small size and hydrophobic (A) to medium size and polar (T)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

0

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Other resources:

Links to websites of interest for the variant.

Variant rs7094973 [ dbSNP | Ensembl ]

Sequence information

Variant position:

62

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

360

The length of the canonical sequence.

Location on the sequence:

TALIEQRLAQEEENEKLRGD A RQKLPMDLLVLEDEKHHGAQ

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         TALIEQRLAQEEENEKLRGDARQKLPMDLLVLEDEKHHGAQ

Mouse                         TELIEQRLAQEEETEKLRRSAPGKLSMDMLVLEEEKRLGVQ

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 360	Ankyrin repeat domain-containing protein 2
Region	5 – 120	May mediate interaction with PML, p53/TP53 and YBX1

Literature citations

Characterization of human skeletal muscle Ankrd2.
Pallavicini A.; Kojic S.; Bean C.; Vainzof M.; Salamon M.; Ievolella C.; Bortoletto G.; Pacchioni B.; Zatz M.; Lanfranchi G.; Faulkner G.; Valle G.;
Biochem. Biophys. Res. Commun. 285:378-386(2001)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1); NUCLEOTIDE SEQUENCE [MRNA] OF 25-360 (ISOFORM 1); VARIANT THR-62; TISSUE SPECIFICITY;

The muscle ankyrin repeat proteins: CARP, ankrd2/Arpp and DARP as a family of titin filament-based stress response molecules.
Miller M.K.; Bang M.-L.; Witt C.C.; Labeit D.; Trombitas C.; Watanabe K.; Granzier H.; McElhinny A.S.; Gregorio C.C.; Labeit S.;
J. Mol. Biol. 333:951-964(2003)
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; INTERACTION WITH TTN; VARIANT THR-62;

Complete sequencing and characterization of 21,243 full-length human cDNAs.
Ota T.; Suzuki Y.; Nishikawa T.; Otsuki T.; Sugiyama T.; Irie R.; Wakamatsu A.; Hayashi K.; Sato H.; Nagai K.; Kimura K.; Makita H.; Sekine M.; Obayashi M.; Nishi T.; Shibahara T.; Tanaka T.; Ishii S.; Yamamoto J.; Saito K.; Kawai Y.; Isono Y.; Nakamura Y.; Nagahari K.; Murakami K.; Yasuda T.; Iwayanagi T.; Wagatsuma M.; Shiratori A.; Sudo H.; Hosoiri T.; Kaku Y.; Kodaira H.; Kondo H.; Sugawara M.; Takahashi M.; Kanda K.; Yokoi T.; Furuya T.; Kikkawa E.; Omura Y.; Abe K.; Kamihara K.; Katsuta N.; Sato K.; Tanikawa M.; Yamazaki M.; Ninomiya K.; Ishibashi T.; Yamashita H.; Murakawa K.; Fujimori K.; Tanai H.; Kimata M.; Watanabe M.; Hiraoka S.; Chiba Y.; Ishida S.; Ono Y.; Takiguchi S.; Watanabe S.; Yosida M.; Hotuta T.; Kusano J.; Kanehori K.; Takahashi-Fujii A.; Hara H.; Tanase T.-O.; Nomura Y.; Togiya S.; Komai F.; Hara R.; Takeuchi K.; Arita M.; Imose N.; Musashino K.; Yuuki H.; Oshima A.; Sasaki N.; Aotsuka S.; Yoshikawa Y.; Matsunawa H.; Ichihara T.; Shiohata N.; Sano S.; Moriya S.; Momiyama H.; Satoh N.; Takami S.; Terashima Y.; Suzuki O.; Nakagawa S.; Senoh A.; Mizoguchi H.; Goto Y.; Shimizu F.; Wakebe H.; Hishigaki H.; Watanabe T.; Sugiyama A.; Takemoto M.; Kawakami B.; Yamazaki M.; Watanabe K.; Kumagai A.; Itakura S.; Fukuzumi Y.; Fujimori Y.; Komiyama M.; Tashiro H.; Tanigami A.; Fujiwara T.; Ono T.; Yamada K.; Fujii Y.; Ozaki K.; Hirao M.; Ohmori Y.; Kawabata A.; Hikiji T.; Kobatake N.; Inagaki H.; Ikema Y.; Okamoto S.; Okitani R.; Kawakami T.; Noguchi S.; Itoh T.; Shigeta K.; Senba T.; Matsumura K.; Nakajima Y.; Mizuno T.; Morinaga M.; Sasaki M.; Togashi T.; Oyama M.; Hata H.; Watanabe M.; Komatsu T.; Mizushima-Sugano J.; Satoh T.; Shirai Y.; Takahashi Y.; Nakagawa K.; Okumura K.; Nagase T.; Nomura N.; Kikuchi H.; Masuho Y.; Yamashita R.; Nakai K.; Yada T.; Nakamura Y.; Ohara O.; Isogai T.; Sugano S.;
Nat. Genet. 36:40-45(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1); VARIANT THR-62;

Identification of a novel human ankyrin-repeated protein homologous to CARP.
Moriyama M.; Tsukamoto Y.; Fujiwara M.; Kondo G.; Nakada C.; Baba T.; Ishiguro N.; Miyazaki A.; Nakamura K.; Hori N.; Sato K.; Shomori K.; Takeuchi K.; Satoh H.; Mori S.; Ito H.;
Biochem. Biophys. Res. Commun. 285:715-723(2001)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 25-360 (ISOFORM 1); TISSUE SPECIFICITY; VARIANT THR-62;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9GZV1: Variant p.Ala62Thr