UniProtKB/SwissProt variant VAR

Variant information

Variant position:

88

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LB/B

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Cysteine (C) to Arginine (R) at position 88 (C88R, p.Cys88Arg).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from medium size and polar (C) to large size and basic (R)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-3

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Other resources:

Links to websites of interest for the variant.

Variant rs55918055 [ dbSNP | Ensembl ]

Sequence information

Variant position:

88

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

554

The length of the canonical sequence.

Location on the sequence:

EELNYTVPGLGPAGEAFLGQ C RRYEVDWNQSALSCVDPLAS

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         EELNYTVPGLGPAGEA-FLGQCRRYEVDWNQSALSCVDPLAS

Mouse                         EELNYTVPGLGSAGEASFLSQCMKYEVDWNQSTLDCVDPLS

Rat                           EELNYTVPGLGPSDEASFLSQCMRYEVDWNQSTLDCVDPLS

Pig                           EELNYTVPGLGPAGQA-FPRQCRRYEVDWNQSTLGCEDPLA

Bovine                        EELNYTVPGPGPE------SQCLRYEVDWNQSTLGCLDPLA

Rabbit                        EELNYTVPGLGATDGA-FVRQCMRYEVDWNQSSLGCVDPLA

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 554	Solute carrier family 22 member 1
Topological domain	43 – 149	Extracellular
Glycosylation	71 – 71	N-linked (GlcNAc...) asparagine

Literature citations

Identification of genetic variations of the human organic cation transporter hOCT1 and their functional consequences.
Kerb R.; Brinkmann U.; Chatskaia N.; Gorbunov D.; Gorboulev V.; Mornhinweg E.; Keil A.; Eichelbaum M.; Koepsell H.;
Pharmacogenetics 12:591-595(2002)
Cited for: VARIANTS CYS-61; ARG-88; PHE-160; SER-401 AND MET-420 DEL; CHARACTERIZATION OF VARIANTS CYS-61; ARG-88; PHE-160; SER-401 AND MET-420 DEL;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot O15245: Variant p.Cys88Arg