Variant position: 349 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 934 The length of the canonical sequence.
Location on the sequence:
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human LLNKCKTPQGQRLVNQWIKQ PLMDKNRIEERLNLVEAFVED
Mouse LLNKCKTAQGQRLVNQWIKQ PLMDRNRIEERLNLVEAFVED
Rat FLNKCKTAQGQRLVSQWIKQ PLMDKNRIEERLNLVEAFVED
Bovine LLNKCKTPQGQRLVNQWIKQ PLMDKNRIEERLNLVEAFVED
Drosophila VLDHCRTPQGHRLMGQWVKQ PLRSRNILNDRHNIVQCLLES
Slime mold LLNQCNTPMGSRLLLQWVKQ PLLNAEEIEARLNFVEAFYND
Baker's yeast LLNHCKTNAGVRLLNEWLKQ PLTNIDEINKRHDLVDYLIDQ
Fission yeast LLNHCRTAMGARNLRRWIVQ PLLDAKSIERRHDLVSALVED
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
2 – 934 DNA mismatch repair protein Msh2
BRAF screening as a low-cost effective strategy for simplifying HNPCC genetic testing.
Domingo E.; Laiho P.; Ollikainen M.; Pinto M.; Wang L.; French A.J.; Westra J.; Frebourg T.; Espin E.; Armengol M.; Hamelin R.; Yamamoto H.; Hofstra R.M.W.; Seruca R.; Lindblom A.; Peltomaeki P.; Thibodeau S.N.; Aaltonen L.A.; Schwartz S. Jr.;
J. Med. Genet. 41:664-668(2004)
Cited for: VARIANTS HNPCC1 LEU-349 AND ASN-596 DEL;
Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.