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UniProtKB/Swiss-Prot Q6Y7W6: Variant p.Pro460Thr

GRB10-interacting GYF protein 2
Gene: GIGYF2
Variant information

Variant position:  460
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LB/B
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Proline (P) to Threonine (T) at position 460 (P460T, p.Pro460Thr).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from medium size and hydrophobic (P) to medium size and polar (T)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -1
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  460
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  1299
The length of the canonical sequence.

Location on the sequence:   IPSDTASPLLILPPPVPNPS  P TLRPVETPVVGAPGMGSVST
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         IPSDTASPLLIL---PPPVPNPSPTLRPVETPVVGAPGM-------------GSVST

Mouse                         LPPDTASPLLIL---SPPVPTPSSASRPVETAAVEAPGM--

Xenopus laevis                SPARQPDPHIVPAMSSVPVPQLDTPTVPIHSSVCAAPGM--

Zebrafish                     LPV--PAPSVLP---VKSVPPQSQQVKPIEMPVSVPPALLR

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 2 – 1299 GRB10-interacting GYF protein 2


Literature citations

Mutations in the GIGYF2 (TNRC15) gene at the PARK11 locus in familial Parkinson disease.
Lautier C.; Goldwurm S.; Duerr A.; Giovannone B.; Tsiaras W.G.; Pezzoli G.; Brice A.; Smith R.J.;
Am. J. Hum. Genet. 82:822-833(2008)
Cited for: VARIANTS PARK11 ALA-112; VAL-278; THR-335; THR-457; GLU-606 AND ILE-1242; VARIANTS SER-56; THR-460; ARG-1171; GLN-1211 DEL AND GLN-1212 INS;

GIGYF2 Asn56Ser and Asn457Thr mutations in Parkinson disease patients.
Guo Y.; Jankovic J.; Zhu S.; Le W.; Song Z.; Xie W.; Liao D.; Yang H.; Deng H.;
Neurosci. Lett. 454:209-211(2009)
Cited for: VARIANT THR-460;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.