UniProtKB/Swiss-Prot P01112: Variant p.Lys117Arg

GTPase HRas
Gene: HRAS
Chromosomal location: 11p15.5
Variant information

Variant position:  117
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Disease [Disclaimer]
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Lysine (K) to Arginine (R) at position 117 (K117R, p.Lys117Arg).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Similar physico-chemical property. Both residues are large size and basic.
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  2
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Involvement in disease:  Costello syndrome (CSTLO) [MIM:218040]: A rare condition characterized by prenatally increased growth, postnatal growth deficiency, mental retardation, distinctive facial appearance, cardiovascular abnormalities (typically pulmonic stenosis, hypertrophic cardiomyopathy and/or atrial tachycardia), tumor predisposition, skin and musculoskeletal abnormalities. {ECO:0000269|PubMed:16170316, ECO:0000269|PubMed:16329078, ECO:0000269|PubMed:16443854, ECO:0000269|PubMed:17054105, ECO:0000269|PubMed:18039947, ECO:0000269|PubMed:18247425, ECO:0000269|PubMed:19995790}. Note=The disease is caused by mutations affecting the gene represented in this entry.
The name and a short description of the disease associated with the variant. For more information about the disease, the user can refer to OMIM, following the link provided after the disease acronym.

Variant description:  In CSTLO.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  117
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  189
The length of the canonical sequence.

Location on the sequence:   REQIKRVKDSDDVPMVLVGN  K CDLAARTVESRQAQDLARSY
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         REQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSY

Mouse                         REQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSY

Rat                           REQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSY

Chicken                       REQIKRVKDSDDVPMVLVGNKCDLPARTVETRQAQDLARSY

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 186 GTPase HRas
Chain 2 – 186 GTPase HRas, N-terminally processed
Nucleotide binding 116 – 119 GTP
Modified residue 118 – 118 S-nitrosocysteine
Mutagenesis 118 – 118 C -> S. Abolishes S-nitrosylation. No stimulation of guanine nucleotide exchange.
Mutagenesis 119 – 119 D -> N. Loss of GTP-binding activity.


Literature citations

Genotype-phenotype correlation in Costello syndrome: HRAS mutation analysis in 43 cases.
Kerr B.; Delrue M.-A.; Sigaudy S.; Perveen R.; Marche M.; Burgelin I.; Stef M.; Tang B.; Eden O.B.; O'Sullivan J.; De Sandre-Giovannoli A.; Reardon W.; Brewer C.; Bennett C.; Quarell O.; M'Cann E.; Donnai D.; Stewart F.; Hennekam R.; Cave H.; Verloes A.; Philip N.; Lacombe D.; Levy N.; Arveiler B.; Black G.;
J. Med. Genet. 43:401-405(2006)
Cited for: VARIANTS CSTLO SER-12; CYS-12; GLU-12; ALA-12 AND ARG-117;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.