UniProtKB/Swiss-Prot Q9NZT1: Variant p.Ser58Gly

• Variant information
• Sequence information
• Literature citations
• All

Variant information

Variant position: 58 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: LB/B The variants are classified into three categories: LP/P, LB/B and US.

• LP/P: likely pathogenic or pathogenic.
• LB/B: likely benign or benign.
• US: uncertain significance

Residue change: From Serine (S) to Glycine (G) at position 58 (S58G, p.Ser58Gly). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: Change from small size and polar (S) to glycine (G) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: 0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

• Lowest score: -4 (low probability of substitution).
• Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description: Confirmed at protein level. Any additional useful information about the variant.
Other resources: Links to websites of interest for the variant.

• Variant rs11546426 [ dbSNP | Ensembl ]

Sequence information

Variant position: 58 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 146 The length of the canonical sequence.
Location on the sequence: KATGKNLSEAQLRKLISEVD S DGDGEISFQEFLTAAKKARA The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

• Type: the type of sequence feature.
• Positions: endpoints of the sequence feature.
• Description: contains additional information about the feature.

Type	Positions	Description
Chain	2 – 146	Calmodulin-like protein 5
Domain	44 – 74	EF-hand 2
Binding site	57 – 57
Binding site	59 – 59
Binding site	61 – 61
Binding site	63 – 63
Binding site	68 – 68

Literature citations

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The MGC Project Team;
Genome Res. 14:2121-2127(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]; VARIANTS GLY-58 AND ARG-74; Detection and validation of non-synonymous coding SNPs from orthogonal analysis of shotgun proteomics data.
Bunger M.K.; Cargile B.J.; Sevinsky J.R.; Deyanova E.; Yates N.A.; Hendrickson R.C.; Stephenson J.L. Jr.;
J. Proteome Res. 6:2331-2340(2007)
Cited for: VARIANTS GLY-58 AND ARG-74; IDENTIFICATION BY MASS SPECTROMETRY;