UniProtKB/Swiss-Prot P62195: Variant p.Arg258Trp

26S proteasome regulatory subunit 8
Gene: PSMC5
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Variant information Variant position:

258 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Arginine (R) to Tryptophan (W) at position 258 (R258W, p.Arg258Trp). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from large size and basic (R) to large size and aromatic (W) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs11543211 [ dbSNP | Ensembl ]

Sequence information Variant position:

258 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

406 The length of the canonical sequence.
Location on the sequence:

AREHAPSIIFMDEIDSIGSS R LEGGSGGDSEVQRTMLELLN The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         AREHAPSIIFMDEIDSIGSSRLEGGS-GGDSEVQRTMLELLN

Mouse                         AREHAPSIIFMDEIDSIGSSRLEGGS-GGDSEVQRTMLELL

Rat                           AREHAPSIIFMDEIDSIGSSRLEGGS-GGDSEVQRTMLELL

Pig                           AREHAPSIIFMDEIDSIGSSRLEGGS-GGDSEVQRTMLELL

Bovine                        AREHAPSIIFMDEIDSIGSSRLEGGS-GGDSEVQRTMLELL

Xenopus laevis                AREHAPSIIFMDEIDSIGS-RLEGGS-GGDSEVQRTMLELL

Caenorhabditis elegans        AREHAPSIIFMDEIDSIGSSRVEGSS-GGDSEVQRTMLELL

Drosophila                    AREHAPSIIFMDEIDSIGSSRIESGS-GGDSEVQRTMLELL

Slime mold                    AREHAPSIIFMDEIDSIGSSRGESGSGGGDSEVQRTMLELL

Baker's yeast                 AREHAPSIIFMDEIDSIGSTRVEGSG-GGDSEVQRTMLELL

Fission yeast                 AREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELL

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	2 – 406	26S proteasome regulatory subunit 8
Region	186 – 406	May mediate interaction with PRPF9

Literature citations
No reference for the current variant in UniProtKB/Swiss-Prot.

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.