UniProtKB/SwissProt variant VAR

Variant information

Variant position:

449

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LB/B

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Alanine (A) to Threonine (T) at position 449 (A449T, p.Ala449Thr).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from small size and hydrophobic (A) to medium size and polar (T)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

0

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

May contribute to hypogonadotropic hypogonadism in patients carrying disease-causing mutations in SPRY4 or KAL1.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs17033889 [ dbSNP | Ensembl ]

Sequence information

Variant position:

449

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

465

The length of the canonical sequence.

Location on the sequence:

ATPRDPSFNGCSRRNSKSAS A TSSFISSPYTSVDEYS

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         ATPRDPSFNGCSRRNSKSASATSSFISSPYTSVDEYS

Mouse                         AVPRDPSANGCSHREFKSASTTSSFISSPYTSVDEYS

Rat                           AVPRDPSANGCSHRGSKSASTTSSFISSPYTSVDEYS

Rabbit                        ATPGDPNFNGCSRRNSKSASTTSSFISSPYTSMEEYS

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 465	Neuromedin-K receptor
Topological domain	360 – 465	Cytoplasmic
Region	415 – 465	Disordered
Compositional bias	436 – 465	Polar residues

Literature citations

Mutations in FGF17, IL17RD, DUSP6, SPRY4, and FLRT3 are identified in individuals with congenital hypogonadotropic hypogonadism.
Miraoui H.; Dwyer A.A.; Sykiotis G.P.; Plummer L.; Chung W.; Feng B.; Beenken A.; Clarke J.; Pers T.H.; Dworzynski P.; Keefe K.; Niedziela M.; Raivio T.; Crowley W.F. Jr.; Seminara S.B.; Quinton R.; Hughes V.A.; Kumanov P.; Young J.; Yialamas M.A.; Hall J.E.; Van Vliet G.; Chanoine J.P.; Rubenstein J.; Mohammadi M.; Tsai P.S.; Sidis Y.; Lage K.; Pitteloud N.;
Am. J. Hum. Genet. 92:725-743(2013)
Cited for: VARIANT HH11 GLN-364; VARIANTS ARG-286 AND THR-449;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P29371: Variant p.Ala449Thr