UniProtKB/SwissProt variant VAR

Variant information

Variant position:

34

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LP/P [Disclaimer]

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Asparagine (N) to Serine (S) at position 34 (N34S, p.Asn34Ser).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from medium size and polar (N) to small size and polar (S)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

1

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

In GLUT1DS1; 55% of wild-type glucose uptake activity.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs80359812 [ dbSNP | Ensembl ]

Sequence information

Variant position:

34

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

492

The length of the canonical sequence.

Location on the sequence:

LAVGGAVLGSLQFGYNTGVI N APQKVIEEFYNQTWVHRYGE

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         LAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWVHRYGE

Mouse                         LAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWNHRYGE

Rat                           LAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWNHRYGE

Pig                           LAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWLHRYGE

Bovine                        LAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWVQRYGE

Rabbit                        LAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWIHRYGE

Sheep                         LAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWMQRYGE

Chicken                       LAVGGAVLGSLQFGYNTGVINRPQKVIEDFYNHTWLYRYEE

Drosophila                    YSIFSAVLGMLQFGYNTGVINAPEKNIENFMKDVYKDRYGE

Baker's yeast                 -----------------MSSNNRKKLL--------------

Fission yeast                 ---------------------MRKKVL--------------

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 492	Solute carrier family 2, facilitated glucose transporter member 1
Topological domain	34 – 66	Extracellular
Glycosylation	45 – 45	N-linked (GlcNAc...) asparagine
Mutagenesis	45 – 45	N -> T. Loss of glycosylation site.
Beta strand	32 – 34

Literature citations

Glut-1 deficiency syndrome: clinical, genetic, and therapeutic aspects.
Wang D.; Pascual J.M.; Yang H.; Engelstad K.; Jhung S.; Sun R.P.; De Vivo D.C.;
Ann. Neurol. 57:111-118(2005)
Cited for: VARIANTS GLUT1DS1 SER-34; HIS-126; SER-130; CYS-153; LEU-169 DEL; MET-295 AND TRP-333; CHARACTERIZATION OF VARIANTS GLUT1 DEFICIENCY SER-34; HIS-126; SER-130; CYS-153; LEU-169 DEL; MET-295 AND TRP-333;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P11166: Variant p.Asn34Ser