UniProtKB/Swiss-Prot Q8NDV7: Variant p.Ala592Thr

Trinucleotide repeat-containing gene 6A protein
Gene: TNRC6A
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Variant information Variant position:

592 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Alanine (A) to Threonine (T) at position 592 (A592T, p.Ala592Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from small size and hydrophobic (A) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs6497759 [ dbSNP | Ensembl ]

Sequence information Variant position:

592 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

1962 The length of the canonical sequence.
Location on the sequence:

GVWESGAANSQSTSWGSGNG A NSGGSRRGWGTPAQNTGTNL The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         GVWESGAANSQSTSWGSGNGANSGGSRRGWGTPAQNTGTNL

Mouse                         GVWEPGTVNSQSSPWGSGNGANSGGSRRGWGSPAQNTGTGL

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 1962	Trinucleotide repeat-containing gene 6A protein
Region	1 – 932	Interaction with argonaute family proteins
Region	502 – 751	Sufficient for interaction with AGO2
Region	560 – 699	Disordered
Region	566 – 1343	Sufficient for interaction with AGO1 and AGO4
Alternative sequence	1 – 1801	Missing. In isoform 4.
Alternative sequence	1 – 1232	Missing. In isoform 3.

Literature citations
No reference for the current variant in UniProtKB/Swiss-Prot.

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.