UniProtKB/Swiss-Prot P21815: Variant p.Glu270Asp

Integrin-binding sialoprotein
Gene: IBSP
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Variant information Variant position:

270 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Glutamate (E) to Aspartate (D) at position 270 (E270D, p.Glu270Asp). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Similar physico-chemical property. Both residues are medium size and acidic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs1054629 [ dbSNP | Ensembl ]

Sequence information Variant position:

270 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

317 The length of the canonical sequence.
Location on the sequence:

PFGKTTTVEYEGEYEYTGAN E YDNGYEIYESENGEPRGDNY The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         PFGKTTTVEYEGEYEYTGANEYDNG--YEIYESENGEPRGDNY

Mouse                         PIRKSSTVEYGGEYEQTG-NEYNNE--YEVYDNENGEPRGD

Rat                           PARKSSTVEYGEEYEQIG-NEYNTA--YETYDENNGEPRGD

Pig                           PSGKTTTPEYEGEYEQTGAHEYDNG--YEIYESENGEPRGD

Bovine                        PFGKITTP---GEYEQTGTNEYDNG--YEIYESENGDPRGD

Chicken                       ---EVTTAGEQWEYEVTVGARGDEGPTESSYGDQEEPARGD

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	17 – 317	Integrin-binding sialoprotein
Modified residue	280 – 280	Phosphoserine
Mutagenesis	288 – 288	D -> E. Modestly reduces cell attachment activity.

Literature citations
The human bone sialoprotein gene (IBSP): genomic localization and characterization.
Kerr J.M.; Fisher L.W.; Termine J.D.; Wang M.G.; McBride W.; Young M.F.;
Genomics 17:408-415(1993)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS GLU-195; GLY-213; GLY-219 AND ASP-270; Characterization of the human bone sialoprotein (BSP) gene and its promoter sequence.
Kim R.H.; Shapiro H.S.; Li J.J.; Wrana J.L.; Sodek J.;
Matrix Biol. 14:31-40(1994)
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]; VARIANTS GLU-195; GLY-213 AND ASP-270;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.