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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P54098: Variant p.Thr885Ser

DNA polymerase subunit gamma-1
Gene: POLG
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Variant information Variant position: help 885 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Threonine (T) to Serine (S) at position 885 (T885S, p.Thr885Ser). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and polar (T) to small size and polar (S) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In MTDPS4A. Any additional useful information about the variant.


Sequence information Variant position: help 885 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 1239 The length of the canonical sequence.
Location on the sequence: help ARPDRVGSELKAMVQAPPGY T LVGADVDSQELWIAAVLGDA The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         ARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDA

Mouse                         ARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAAVLGDA

Rat                           ARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAAVLGDA

Xenopus laevis                ARADRVGSELKAMVQVPPGYHLIGADVDSQELWIAAILGEA

Drosophila                    SRPDRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDA
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 1239 DNA polymerase subunit gamma-1
Binding site 869 – 869
Binding site 890 – 890
Binding site 890 – 890
Binding site 890 – 890
Binding site 891 – 891
Binding site 891 – 891
Binding site 893 – 893
Binding site 895 – 895
Mutagenesis 890 – 890 D -> N. Abolishes DNA polymerase activity.
Beta strand 884 – 890



Literature citations
Phenotypic spectrum associated with mutations of the mitochondrial polymerase gamma gene.
Horvath R.; Hudson G.; Ferrari G.; Fuetterer N.; Ahola S.; Lamantea E.; Prokisch H.; Lochmueller H.; McFarland R.; Ramesh V.; Klopstock T.; Freisinger P.; Salvi F.; Mayr J.A.; Santer R.; Tesarova M.; Zeman J.; Udd B.; Taylor R.W.; Turnbull D.; Hanna M.; Fialho D.; Suomalainen A.; Zeviani M.; Chinnery P.F.;
Brain 129:1674-1684(2006)
Cited for: VARIANTS PEOB1 HIS-308; TRP-574 AND ARG-648; VARIANT SANDO VAL-517; VARIANTS MTDPS4A ASP-767; HIS-879; SER-885; PRO-914; HIS-1096 AND ASN-1191;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.