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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q02817: Variant p.Ser1619Arg

Mucin-2
Gene: MUC2
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Variant information Variant position: help 1619 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LB/B The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change: help From Serine (S) to Arginine (R) at position 1619 (S1619R, p.Ser1619Arg). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from small size and polar (S) to large size and basic (R) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Polymorphism: help The number of repeats is highly polymorphic and varies among different alleles. Additional information on the polymorphism described.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 1619 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 5289 The length of the canonical sequence.
Location on the sequence: help TTTPSPPTTTTTTPPPTTTP S PPTTTPITPPTSTTTLPPTT The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human                         TTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTT

Mouse                         TTSPTTPSTTS----PTISTTTSTTSPTTPSTTSPTTPSTT

Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 21 – 5289 Mucin-2
Repeat 1613 – 1635 10B
Region 1399 – 1773 Disordered
Region 1401 – 1747 Approximate repeats
Compositional bias 1401 – 1698 Pro residues



Literature citations
No reference for the current variant in UniProtKB/Swiss-Prot.
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.