UniProtKB/Swiss-Prot Q8TE56: Variant p.Asn1094Ser

• Variant information
• Sequence information
• Literature citations
• All

Variant information

Variant position: 1094 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: LB/B The variants are classified into three categories: LP/P, LB/B and US.

• LP/P: likely pathogenic or pathogenic.
• LB/B: likely benign or benign.
• US: uncertain significance

Residue change: From Asparagine (N) to Serine (S) at position 1094 (N1094S, p.Asn1094Ser). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: Change from medium size and polar (N) to small size and polar (S) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

• Lowest score: -4 (low probability of substitution).
• Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources: Links to websites of interest for the variant.

• Variant rs2573652 [ dbSNP | Ensembl ]

Sequence information

Variant position: 1094 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 1095 The length of the canonical sequence.
Location on the sequence: QRCCQTCRDFYANKMRQPPP N S The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

• Type: the type of sequence feature.
• Positions: endpoints of the sequence feature.
• Description: contains additional information about the feature.

Type	Positions	Description
Chain	224 – 1095	A disintegrin and metalloproteinase with thrombospondin motifs 17
Alternative sequence	746 – 1095	Missing. In isoform 2.

Literature citations

Cloning, expression analysis, and structural characterization of seven novel human ADAMTSs, a family of metalloproteinases with disintegrin and thrombospondin-1 domains.
Cal S.; Obaya A.J.; Llamazares M.; Garabaya C.; Quesada V.; Lopez-Otin C.;
Gene 283:49-62(2002)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1); VARIANT SER-1094; Homozygous mutations in ADAMTS10 and ADAMTS17 cause lenticular myopia, ectopia lentis, glaucoma, spherophakia, and short stature.
Morales J.; Al-Sharif L.; Khalil D.S.; Shinwari J.M.; Bavi P.; Al-Mahrouqi R.A.; Al-Rajhi A.; Alkuraya F.S.; Meyer B.F.; Al Tassan N.;
Am. J. Hum. Genet. 85:558-568(2009)
Cited for: VARIANTS LEU-216; THR-482 AND SER-1094; INVOLVEMENT IN WMS4; ALTERNATIVE SPLICING; TISSUE SPECIFICITY;