UniProtKB/Swiss-Prot P80370: Variant p.Asp108Gly

Protein delta homolog 1
Gene: DLK1
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Variant information Variant position:

108 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Aspartate (D) to Glycine (G) at position 108 (D108G, p.Asp108Gly). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and acidic (D) to glycine (G) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs1058006 [ dbSNP | Ensembl ]

Sequence information Variant position:

108 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

383 The length of the canonical sequence.
Location on the sequence:

DVRACSSAPCANNRTCVSLD D GLYECSCAPGYSGKDCQKKD The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         DVRACSSAP--CANNRTCVSLDDGLYECSCAPGYS-GKDCQKKD

Mouse                         DVRACTSTP--CANNGTCVDLEKGQYECSCTPGFS-GKDCQ

Rat                           DIRACTSTP--CANNGTCVDLEKGQYECSCTPGFS-GKDCQ

Caenorhabditis elegans        DVQPCRGSPYRCSNTSSSSGVQSSPFSRQSSSRSSAGQQTR

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	24 – 383	Protein delta homolog 1
Chain	24 – 303	Fetal antigen 1
Topological domain	24 – 303	Extracellular
Domain	88 – 125	EGF-like 3
Glycosylation	94 – 94	O-linked (GalNAc...) serine
Glycosylation	100 – 100	N-linked (GlcNAc...) asparagine
Disulfide bond	97 – 113

Literature citations
dlk, a putative mammalian homeotic gene differentially expressed in small cell lung carcinoma and neuroendocrine tumor cell line.
Laborda J.; Sausville E.A.; Hoffman T.; Notario V.;
J. Biol. Chem. 268:3817-3820(1993)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM LONG); VARIANTS GLY-101 AND GLY-108; dlk, pG2 and Pref-1 mRNAs encode similar proteins belonging to the EGF-like superfamily. Identification of polymorphic variants of this RNA.
Lee Y.L.; Helman L.; Hoffman T.; Laborda J.;
Biochim. Biophys. Acta 1261:223-232(1995)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS LONG AND SHORT); VARIANTS GLY-101 AND GLY-108;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.