UniProtKB/SwissProt variant VAR

Variant information

Variant position:

682

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LP/P [Disclaimer]

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Glycine (G) to Aspartate (D) at position 682 (G682D, p.Gly682Asp).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from glycine (G) to medium size and acidic (D)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-1

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

In AA; non-severe; abolishes telomerase catalytic activity but little effect on binding to TERC.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs199422295 [ dbSNP | Ensembl ]

Sequence information

Variant position:

682

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

1132

The length of the canonical sequence.

Location on the sequence:

FSVLNYERARRPGLLGASVL G LDDIHRAWRTFVLRVRAQDP

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         FSVLNYERARRPGLLGASVLGLDDIHRAWRTF---VLRVRAQDP

                              FSVLNYERARRPSLLGASMLGMDDIHRAWRTF---VLRIRA

Mouse                         FSMLNYERTKHPHLMGSSVLGMNDIYRTWRAF---VLRVRA

Rat                           FSVLNYERTKHPNLMGASVLGTSDSYRIWRTF---VLRVRA

Bovine                        FAVLNYERARRPGLLGASVLGMDDIHRAWRAF---VLPLRA

Baker's yeast                 QKILEYLRNKRPTSF-TKIYSPTQIADRIKEFKQRLLK-KF

Fission yeast                 ASILKHLINEESSGIPFNL----EVYMKLLTFKKDLLKHRM

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 1132	Telomerase reverse transcriptase
Domain	605 – 935	Reverse transcriptase

Literature citations

Mutations in telomerase catalytic protein in Japanese children with aplastic anemia.
Liang J.; Yagasaki H.; Kamachi Y.; Hama A.; Matsumoto K.; Kato K.; Kudo K.; Kojima S.;
Haematologica 91:656-658(2006)
Cited for: VARIANTS AA ASP-682 AND MET-726; CHARACTERIZATION OF VARIANT AA MET-726;

Functional characterization of natural telomerase mutations found in patients with hematologic disorders.
Xin Z.T.; Beauchamp A.D.; Calado R.T.; Bradford J.W.; Regal J.A.; Shenoy A.; Liang Y.; Lansdorp P.M.; Young N.S.; Ly H.;
Blood 109:524-532(2007)
Cited for: VARIANT AA ASN-570; CHARACTERIZATION OF VARIANTS ASN-570; ASP-682; ARG-721; MET-726; ASN-902; TRP-979 AND LEU-1127;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot O14746: Variant p.Gly682Asp