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UniProtKB/Swiss-Prot P02452: Variant p.Arg1093Cys

Collagen alpha-1(I) chain
Gene: COL1A1
Variant information

Variant position:  1093
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Unclassified
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Arginine (R) to Cysteine (C) at position 1093 (R1093C, p.Arg1093Cys).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from large size and basic (R) to medium size and polar (C)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -3
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  Found in a patient with isolated osteopenia and vascular rupture; unknown pathological significance.
Any additional useful information about the variant.



Sequence information

Variant position:  1093
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  1464
The length of the canonical sequence.

Location on the sequence:   GPTGPVGPVGARGPAGPQGP  R GDKGETGEQGDRGIKGHRGF
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         GPTGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGF

                              GPAGPIGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGF

Mouse                         GPAGPIGPAGARGPAGPQGPRGDKGETGEQGDRGIKGHRGF

Rat                           GPAGPIGPAGARGPAGPQGPRGDKGETGEQGDRGIKGHRGF

Bovine                        GPAGPIGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGF

Chicken                       GPAGPPGPAGARGPAGPQGPRGDKGETGEQGDRGMKGHRGF

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 162 – 1218 Collagen alpha-1(I) chain
Region 179 – 1192 Triple-helical region
Motif 1093 – 1095 Cell attachment site
Modified residue 1096 – 1096 5-hydroxylysine
Modified residue 1108 – 1108 5-hydroxylysine; alternate
Glycosylation 1108 – 1108 O-linked (Gal...) hydroxylysine; alternate


Literature citations

Three arginine to cysteine substitutions in the pro-alpha (I)-collagen chain cause Ehlers-Danlos syndrome with a propensity to arterial rupture in early adulthood.
Malfait F.; Symoens S.; De Backer J.; Hermanns-Le T.; Sakalihasan N.; Lapiere C.M.; Coucke P.; De Paepe A.;
Hum. Mutat. 28:387-395(2007)
Cited for: VARIANT EDSCL1 CYS-312; VARIANTS CYS-574 AND CYS-1093;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.