Variant position: 57 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 1487 The length of the canonical sequence.
Location on the sequence:
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human DGQRYNDKDVWKPEPCRICV CDTGTVLCDDIICEDVKDCLS
Mouse NGQRYKDKDVWKPSSCRICV CDTGNVLCDDIICEDP-DCLN
Rat -------------------- ---------------------
Bovine DGQRYNDKDVWKPEPCRICV CDTGTVLCDDIICEDMKDCLS
Xenopus laevis HGQRYSDKDVWKPEPCQICV CDTGTVLCDDIICEESKDCPN
Xenopus tropicalis HGQRYSDKDVWKPEPCQICV CDTGNVLCDEIICEDPKDCPN
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
26 – 181 N-terminal propeptide
32 – 90 VWFC
1 – 1219 Missing. In isoform 3.
29 – 98 QEAGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPTDLATASG -> R. In isoform 1.
53 – 58
Missense and nonsense mutations in the alternatively-spliced exon 2 of COL2A1 cause the ocular variant of Stickler syndrome.
McAlinden A.; Majava M.; Bishop P.N.; Perveen R.; Black G.C.M.; Pierpont M.E.; Ala-Kokko L.; Maennikkoe M.;
Hum. Mutat. 29:83-90(2008)
Cited for: VARIANT STL1O TYR-57;
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