UniProtKB/SwissProt variant VAR

Variant information

Variant position:

445

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LP/P [Disclaimer]

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Threonine (T) to Proline (P) at position 445 (T445P, p.Thr445Pro).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from medium size and polar (T) to medium size and hydrophobic (P)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-1

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

In EVR1.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs80358297 [ dbSNP | Ensembl ]

Sequence information

Variant position:

445

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

537

The length of the canonical sequence.

Location on the sequence:

TKTDKLERLMVKIGVFSVLY T VPATCVIACYFYEISNWALF

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         TKTDKLERLMVKIGVFSVLYTVPATCVIACYFYEISNWALF

Mouse                         TKTDKLERLMVKIGVFSVLYTVPATCVIACYFYEISNWALF

Rat                           TKTDKLERLMVKIGVFSVLYTVPATCVIACYFYEISNWALF

Chicken                       TKTDKLERLMVKIGVFSVLYTVPATCVIACYFYEISNWAVF

Xenopus laevis                TKTDKLERLMVKIGVFSVLYTVPATCVIACYFYEVSNWNVF

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	37 – 537	Frizzled-4
Transmembrane	432 – 460	Helical; Name=6
Mutagenesis	444 – 444	Y -> AF. Reduced signaling activity.
Mutagenesis	455 – 455	Y -> A. Increased signaling activity in presence of WNT3A but not in presence of NDP/norrin.
Mutagenesis	458 – 458	E -> A. No effect on signaling activity.
Helix	445 – 460

Literature citations

Clinical and molecular evaluation of probands and family members with familial exudative vitreoretinopathy.
Boonstra F.N.; van Nouhuys C.E.; Schuil J.; de Wijs I.J.; van der Donk K.P.; Nikopoulos K.; Mukhopadhyay A.; Scheffer H.; Tilanus M.A.D.; Cremers F.P.M.; Hoefsloot L.H.;
Invest. Ophthalmol. Vis. Sci. 50:4379-4385(2009)
Cited for: VARIANTS EVR1 SER-33; LYS-223 AND PRO-445; VARIANT SER-168;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9ULV1: Variant p.Thr445Pro