Variant position: 2090 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 2804 The length of the canonical sequence.
Location on the sequence:
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human EEDLMKLIIKYGMTVVQHCV SCLGAVVNKVTQNFKFVWACF
Mouse EEDLMKLIIKYGMTVVQHCV SCLGAVVNKVTQNFKFVWACF
Caenorhabditis elegans DENLCKVIMFNGMALVVSAV SCVASIYKKFKRGATKTIDVF
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
1 – 2804 Nipped-B-like protein
1102 – 2804 Missing. In isoform 3.
Mutations and variants in the cohesion factor genes NIPBL, SMC1A, and SMC3 in a cohort of 30 unrelated patients with Cornelia de Lange syndrome.
Pie J.; Gil-Rodriguez M.C.; Ciero M.; Lopez-Vinas E.; Ribate M.P.; Arnedo M.; Deardorff M.A.; Puisac B.; Legarreta J.; de Karam J.C.; Rubio E.; Bueno I.; Baldellou A.; Calvo M.T.; Casals N.; Olivares J.L.; Losada A.; Hegardt F.G.; Krantz I.D.; Gomez-Puertas P.; Ramos F.J.;
Am. J. Med. Genet. A 152:924-929(2010)
Cited for: VARIANTS CDLS1 ASN-1897 DEL; ALA-2081; ILE-2090 AND PRO-2150;
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