UniProtKB/SwissProt variant VAR

Variant information

Variant position:

395

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LP/P [Disclaimer]

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Asparagine (N) to Lysine (K) at position 395 (N395K, p.Asn395Lys).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from medium size and polar (N) to large size and basic (K)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

0

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

In PERYTHM.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs80356471 [ dbSNP | Ensembl ]

Sequence information

Variant position:

395

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

1988

The length of the canonical sequence.

Location on the sequence:

GKTYMIFFVVVIFLGSFYLI N LILAVVAMAYEEQNQANIEE

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         GKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEE

Mouse                         GKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEE

Rat                           GKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEE

Rabbit                        GKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEE

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 1988	Sodium channel protein type 9 subunit alpha
Transmembrane	379 – 399	Helical; Name=S6 of repeat I
Repeat	112 – 410	I
Mutagenesis	406 – 406	E -> K. Hyperpolarizes the voltage dependence of activation by 10.6 mV and prolonges fast-inactivation duration when coexpressed with SCN1B and SCN2B.
Helix	391 – 416

Literature citations

SCN9A mutations define primary erythermalgia as a neuropathic disorder of voltage gated sodium channels.
Drenth J.P.; te Morsche R.H.; Guillet G.; Taieb A.; Kirby R.L.; Jansen J.B.;
J. Invest. Dermatol. 124:1333-1338(2005)
Cited for: VARIANTS PERYTHM SER-216; LYS-395; THR-859 AND PHE-869; VARIANT ARG-1161;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q15858: Variant p.Asn395Lys