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UniProtKB/Swiss-Prot Q6P1J9: Variant p.Arg292Lys

Parafibromin
Gene: CDC73
Chromosomal location: 1q25
Variant information

Variant position:  292
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Unclassified
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Arginine (R) to Lysine (K) at position 292 (R292K, p.Arg292Lys).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Similar physico-chemical property. Both residues are large size and basic.
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  2
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  Found in a Wilms tumor sample; somatic mutation.
Any additional useful information about the variant.



Sequence information

Variant position:  292
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  531
The length of the canonical sequence.

Location on the sequence:   NAAPVDPTLRTKQPIPAAYN  R YDQERFKGKEETEGFKIDTM
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         NAAPVDPTLRTKQPIPAAYNRYDQERFKGKEETEGFKIDTM

Mouse                         NAAPVDPTLRTKQPIPAAYNRYDQERFKGKEETEGFKIDTM

Rat                           NAAPVDPTLRTKQPIPAAYNRYDQERFKGKEETEGFKIDTM

Chicken                       NTAPTDPTLRNKQPIPAAYNRYDQERFKGKEETEGFKIDTM

Caenorhabditis elegans        NLSKDQSGAAGGQQQRSGYSRYAQEAFAHEKTKE---IQTE

Baker's yeast                 ---------RGAKPINFGYLIKDAELKLV--------QSIK

Fission yeast                 ---------HGIKPIDFISLRKDVLDYIH------------

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 2 – 531 Parafibromin
Region 200 – 531 Interaction with POLR2A and PAF1
Cross 301 – 301 Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)
Cross 308 – 308 Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)


Literature citations

Sporadic human renal tumors display frequent allelic imbalances and novel mutations of the HRPT2 gene.
Zhao J.; Yart A.; Frigerio S.; Perren A.; Schraml P.; Weisstanner C.; Stallmach T.; Krek W.; Moch H.;
Oncogene 26:3440-3449(2007)
Cited for: VARIANTS GLN-34 AND LYS-292; CHARACTERIZATION OF VARIANT GLN-34; ASSOCIATION WITH RENAL TUMORS;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.