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UniProtKB/Swiss-Prot P21589: Variant p.Cys358Tyr

5'-nucleotidase
Gene: NT5E
Variant information

Variant position:  358
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LP/P [Disclaimer]
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Cysteine (C) to Tyrosine (Y) at position 358 (C358Y, p.Cys358Tyr).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from medium size and polar (C) to large size and aromatic (Y)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -2
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In CALJA; absence from the plasma-membrane; exhibits no catalytic AMPase activity.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  358
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  574
The length of the canonical sequence.

Location on the sequence:   ELGKTIVYLDGSSQSCRFRE  C NMGNLICDAMINNNLRHTDE
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         ELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRHTDE

Mouse                         ELGRTIVYLDGSTQTCRFRECNMGNLICDAMINNNLRHPDE

Rat                           ELGRTIVYLNGSAQECRFRECNMGNLICDAMINNNLRHPDE

Bovine                        ELGKTIVYLDGTAQSCRFRECNMGNLICDAMINNNLRHPDE

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 27 – 549 5'-nucleotidase
Binding site 354 – 354 Substrate
Disulfide bond 353 – 358


Literature citations

NT5E mutations and arterial calcifications.
St Hilaire C.; Ziegler S.G.; Markello T.C.; Brusco A.; Groden C.; Gill F.; Carlson-Donohoe H.; Lederman R.J.; Chen M.Y.; Yang D.; Siegenthaler M.P.; Arduino C.; Mancini C.; Freudenthal B.; Stanescu H.C.; Zdebik A.A.; Chaganti R.K.; Nussbaum R.L.; Kleta R.; Gahl W.A.; Boehm M.;
N. Engl. J. Med. 364:432-442(2011)
Cited for: VARIANT CALJA TYR-358;

NT5E mutations that cause human disease are associated with intracellular mistrafficking of NT5E protein.
Fausther M.; Lavoie E.G.; Goree J.R.; Baldini G.; Dranoff J.A.;
PLoS ONE 9:E98568-E98568(2014)
Cited for: CHARACTERIZATION OF VARIANT CALJA TYR-358;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.