UniProtKB/SwissProt variant VAR

Variant information

Variant position:

85

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LP/P [Disclaimer]

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Glutamate (E) to Lysine (K) at position 85 (E85K, p.Glu85Lys).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from medium size and acidic (E) to large size and basic (K)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

1

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

In FA7D.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs121964935 [ dbSNP | Ensembl ]

Sequence information

Variant position:

85

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

466

The length of the canonical sequence.

Location on the sequence:

LEELRPGSLERECKEEQCSF E EAREIFKDAERTKLFWISYS

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         LEELRPGSLERECKEEQCSFEEAREIFKDAERTKLFWISYS

Chimpanzee                    LEELRPGSLERECKEEQCSFEEAREIFKDLERTKLFWISYS

Mouse                         LEELWPGSLERECNEEQCSFEEAREIFKSPERTKQFWIVYS

Rat                           LEELWSSSLERECNEERCSFEEAREIFKSPERTKQFWTIYS

Bovine                        LEELLPGSLERECREELCSFEEAHEIFRNEERTRQFWVSYN

Rabbit                        LEELRPGSLERECKEELCSFEEAREVFQSTERTKQFWITYN

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	61 – 212	Factor VII light chain
Domain	61 – 105	Gla
Modified residue	66 – 66	4-carboxyglutamate
Modified residue	67 – 67	4-carboxyglutamate
Modified residue	74 – 74	4-carboxyglutamate
Modified residue	76 – 76	4-carboxyglutamate
Modified residue	79 – 79	4-carboxyglutamate
Modified residue	80 – 80	4-carboxyglutamate
Modified residue	85 – 85	4-carboxyglutamate
Modified residue	86 – 86	4-carboxyglutamate
Modified residue	89 – 89	4-carboxyglutamate
Modified residue	95 – 95	4-carboxyglutamate
Helix	84 – 91

Literature citations

Two double heterozygous mutations in the F7 gene show different manifestations.
Nagaizumi K.; Inaba H.; Suzuki T.; Hatta Y.; Hagiwara T.; Amano K.; Arai M.; Fukutake K.;
Br. J. Haematol. 119:1052-1058(2002)
Cited for: VARIANTS FA7D LYS-85 AND GLN-408;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P08709: Variant p.Glu85Lys