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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q86TH1: Variant p.Cys171Arg

ADAMTS-like protein 2
Gene: ADAMTSL2
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Variant information Variant position: help 171 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Cysteine (C) to Arginine (R) at position 171 (C171R, p.Cys171Arg). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and polar (C) to large size and basic (R) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In GPHYSD1. Any additional useful information about the variant.


Sequence information Variant position: help 171 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 951 The length of the canonical sequence.
Location on the sequence: help HCTTVDGQRQLMVPARDGTS C KLTDLRGVCVSGKCEPIGCD The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         HCTTVDGQRQLMVPARDGTSCKLTDLRGVCVSGKCEPIGCD

Mouse                         HCSTVDGQRQLTVPARDGTSCKLTDLRGVCVSGKCEPIGCD
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 23 – 951 ADAMTS-like protein 2



Literature citations
Molecular screening of ADAMTSL2 gene in 33 patients reveals the genetic heterogeneity of geleophysic dysplasia.
Allali S.; Le Goff C.; Pressac-Diebold I.; Pfennig G.; Mahaut C.; Dagoneau N.; Alanay Y.; Brady A.F.; Crow Y.J.; Devriendt K.; Drouin-Garraud V.; Flori E.; Genevieve D.; Hennekam R.C.; Hurst J.; Krakow D.; Le Merrer M.; Lichtenbelt K.D.; Lynch S.A.; Lyonnet S.; MacDermot K.; Mansour S.; Megarbane A.; Santos H.G.; Splitt M.; Superti-Furga A.; Unger S.; Williams D.; Munnich A.; Cormier-Daire V.;
J. Med. Genet. 48:417-421(2011)
Cited for: VARIANTS GPHYSD1 CYS-50; GLN-72; LYS-114; TRP-159; THR-165; ARG-171; CYS-221; THR-239; 383-ASN--ASP-392 DEL; CYS-593; LEU-635 AND LEU-906;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.