Variant position: 17 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 365 The length of the canonical sequence.
Location on the sequence:
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human MTGRDSLSDGRTSSRA LVP-------------GGSP--------RGSRPRGFAITDLL
Mouse MTGRDGLSDARSRSRA LAP-------------GCPP-
Bovine MTGRDALSDGRARSRA LVP-------------GGPS-
Chicken MPGRADPSGGRAAVPV PLPVAVAAAPSPASVRSALPE
Xenopus laevis MTGRDDISEAKSKGKI LAP-------------SVGNE
Zebrafish MTGREEATDEKPKVK- LYP-------------SFGID
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
1 – 365 Visual system homeobox 1
1 – 37 Disordered
VSX1 mutational analysis in a series of Italian patients affected by keratoconus: detection of a novel mutation.
Bisceglia L.; Ciaschetti M.; De Bonis P.; Campo P.A.; Pizzicoli C.; Scala C.; Grifa M.; Ciavarella P.; Delle Noci N.; Vaira F.; Macaluso C.; Zelante L.;
Invest. Ophthalmol. Vis. Sci. 46:39-45(2005)
Cited for: VARIANTS KTCN1 PRO-17; ASP-160 AND ARG-247; VARIANT GLU-144;
Mutational screening of VSX1, SPARC, SOD1, LOX, and TIMP3 in keratoconus.
De Bonis P.; Laborante A.; Pizzicoli C.; Stallone R.; Barbano R.; Longo C.; Mazzilli E.; Zelante L.; Bisceglia L.;
Mol. Vis. 17:2482-2494(2011)
Cited for: VARIANTS KTCN1 PRO-17; ASP-160; ARG-239 AND ARG-247; VARIANT GLU-144;
Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.