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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot O14773: Variant p.Ser62Thr

Tripeptidyl-peptidase 1
Gene: TPP1
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Variant information Variant position: help 62 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Serine (S) to Threonine (T) at position 62 (S62T, p.Ser62Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from small size and polar (S) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In CLN2. Any additional useful information about the variant.


Sequence information Variant position: help 62 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 563 The length of the canonical sequence.
Location on the sequence: help DPEEELSLTFALRQQNVERL S ELVQAVSDPSSPQYGKYLTL The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         DPEE-----ELSLTFALRQQNVERLSELVQAVSDPSSPQYGKYLTL

                              DSEE-----ELSLTFALRQQNVERLSKLVQAVSDPGSPHYG

Chimpanzee                    DPEE-----ELSLTFALRQQNVERLSELVQAVSDPSSPQYG

Mouse                         DPEE-----ELSLTFALKQRNLERLSELVQAVSDPSSPQYG

Rat                           DPEE-----ELSLTFALKQQNLDRLSELVQAVSDPSSPRYG

Bovine                        DPEE-----ELSLTFALRQQNVKRLSELVQAVSDPGSPRYG

Zebrafish                     GPLE-----EVELTFALKQQNVSKMEELLKLVSDPDSHQYG

Slime mold                    TEIENIFSAQIELTFGIRQRNIVELEDFVWRVSDPNDSLYG

Baker's yeast                 DHDE-----HGLNVYAF---------DLDHTIIKPKSPN--

Fission yeast                 WQTTLVGWTGVIPTVSEKEENKDAVTRLDSQDVKRFEETYS
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Propeptide 20 – 195 Removed in mature form
Alternative sequence 1 – 243 Missing. In isoform 2.
Helix 58 – 69



Literature citations
Update of the mutation spectrum and clinical correlations of over 360 mutations in eight genes that underlie the neuronal ceroid lipofuscinoses.
Kousi M.; Lehesjoki A.E.; Mole S.E.;
Hum. Mutat. 33:42-63(2012)
Cited for: VARIANTS CLN2 THR-62; HIS-209; GLN-266; GLN-339; ARG-382; VAL-448; CYS-501; TYR-504 AND ARG-548;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.